Citation Dataset_title Database Persistent_ID
LaPierre et al (2021) Endocrinology   MicroRNA-7a2 regulates prolactin in developing lactotrophs and prolactinoma cells   European Nucleotide Archive   PRJEB39159
Stuttfeld et al (2018) eLife   Architecture of the human mTORC2 core complex (C2)   EMDataResource   EMD-3927
Liko et al (2020) Proc Natl Acad USA   Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs   NCBI Gene Expression Omnibus   GSE141361
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2 focused on one half   EMDataResource   EMD-11492
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2 overall refinement   EMDataResource   EMD-11488
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2, focused on one half   Protein Data Bank   6ZWO
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2, overall refinement   Protein Data Bank   6ZWM
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2 in absence of ATP-gamma-S   EMDataResource   EMD-11489
Scaiola et al (2020) Science Advances   Human mTOR complex 2 with additional density close to the mLST8   EMDataResource   EMD-11491
Scaiola et al (2020) Science Advances   Human mTOR complex 2 with additional density close to the mLST8   EMDataResource   EMD-11490
Nikolaou et al (2019) Cell Rep   Differential splicing analysis of liver-specific A1cf knock-out mice - BioProject   NCBI Sequence Read Archive   PRJNA530736
Nikolaou et al (2019) Cell Rep   PAR-CLIP of A1cf in mouse liver - BioProject   NCBI Sequence Read Archive   PRJNA531626
Kobiita et al (2020) Cell Rep   RNA-seq of isolated pancreatic islets from beta-cell-specific Jazf1 knock-out mice - BioProject   NCBI Sequence Read Archive   PRJNA595139
Kobiita et al (2020) Cell Rep   ChIP-seq data set   NCBI Sequence Read Archive   PRJNA595471
Singh et al (2018) PLoS One   DNA 5-methylcytosine in Paramecium   NCBI Gene Expression Omnibus   GSE111621
Glousker et al (2020) EMBO J   Human POT1 Prevents Severe Telomere Damage Instability Induced by Homology Directed DNA Repair   ProteomXchange data repository   PXD016826
Majerska et al (2018) Life Sci Alliance   Transformation-induced stress at telomeres is counteracted through changes in the telomeric proteome including SAMHD1   ProteomXchange data repository   PXD010088
Bracher et al (2020) Biomolecules   mSeq of vtRNA1.1 and vtRNA1.3 knockout or control cells in standard and starvation condition   NCBI Gene Expression Omnibus   GSE147054
Welte et al (2019) Genes Dev   The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1   NCBI Gene Expression Omnibus   GSE134125
Tuck et al (2020) Mol Cell   Mammalian RNA decay pathways are highly specialized and widely linked to translation   NCBI Gene Expression Omnibus   GSE134020
Knuckles et al (2018) Genes Dev   Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA binding factor Rbm15/Spenito to other components of the m6A machinery   NCBI Gene Expression Omnibus   GSE106614
Tuck et al (2018) Life Sci Alliance   Deconstructing lincRNA regulation during ESC to NPC differentiation   NCBI Gene Expression Omnibus   GSE107493
Biasini et al (2020) EMBO J   Translation is required for miRNA-dependent decay of endogenous transcripts.   NCBI Gene Expression Omnibus   GSE143277
Dalcher et al (2020) EMBO J   BAZ2A safeguards genome architecture of ground-state pluripotent stem cells   NCBI Gene Expression Omnibus   GSE112222
Tan et al (2020) Life Sci Alliance   4sU metabolic labeled transcripts in mESCs   NCBI Gene Expression Omnibus   GSE111951
Ruiz Buendia et al (2020) Science Advances   Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion   NCBI Gene Expression Omnibus   GSE148185
Guay et al (2020) Scientific Reports   Loss-of-function of the long non-coding RNA A830019P07Rik in mice does not affect insulin expression and secretion   NCBI Gene Expression Omnibus   GSE137389
Coe et al (2019) PLoS Genetics   RNA-seq analysis of SKMEL28 melanoma cells following DIRC3 and IGFBP5 ASO knockdown   NCBI Gene Expression Omnibus   GSE129467
Coe et al (2019) PLoS Genetics   The MITF-SOX10 regulated long non-coding RNA DIRC3 is a melanoma tumour suppressor   NCBI Gene Expression Omnibus   GSE129078
Emming, Bianchi et al (2020) Nature Immunology   A molecular network regulating the proinflammatory phenotype of human memory T lymphocytes   NCBI Gene Expression Omnibus   GSE122946
Dalcher et al (2020) EMBO J   BAZ2A safeguards genome architecture of ground-state pluripotent stem cells   NCBI Gene Expression Omnibus   GSE112222
Ngondo et al (2018) Stem Cell Reports   Transcriptome of WT mouse embryonic stem cells   NCBI Gene Expression Omnibus   GSE78971
Ngondo et al (2018) Stem Cell Reports   Roles of Argonaute protein in mouse embryonic stem cells   NCBI Gene Expression Omnibus   GSE80454
Biasini et al (2020) EMBO J   Translation is required for miRNA-dependent decay of endogenous transcripts.   NCBI Gene Expression Omnibus   GSE143277
Ghosh et al (2020) EMBO J   AGO1x prevents dsRNA-induced interferon signaling to promote breast cancer cell proliferation   NCBI Bioproject   PRJNA447929
Ghosh et al (2020) EMBO J   AGO1x stop codon readthrough isoform   ProteomXchange data repository   PXD009401
Liko et al (2020) Proc Natl Acad USA   Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs   NCBI Gene Expression Omnibus   GSE141361
Guimaraes et al (2020) Genome Biol   A rare-codon-based translational program of cell proliferation   NCBI Bioproject   PRJNA472989
Guimaraes et al (2020) Genome Biol   A rare-codon-based translational program of cell proliferation   ProteomXchange data repository   PXD016034
Pandey et al (2018) Cell Rep   Exonuclease domain-containing 1 enhances MIWI2 piRNA biogenesis via its interaction with TDRD12   NCBI Gene Expression Omnibus   GSE119447
Campagne et al (2019) Nat Chem Biol   Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7   Biological Magnetic Resonance Data Bank   34311
Campagne et al (2019) Nat Chem Biol   Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier   Biological Magnetic Resonance Data Bank   34312
Campagne et al (2019) Nat Chem Biol   Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7   Protein Data Bank   6HMI
Campagne et al (2019) Nat Chem Biol   Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier   Protein Data Bank   6HMO
Cléry et al (2021) Nat Commun   Structure of human SRSF1 RRM1 bound to AACAAA RNA   Protein Data Bank   6HPJ
Ripin et al (2019) PNAS   Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM   Protein Data Bank   6GC5
Nikolaev et al (2019) Nat Methods   Data for the Systems NMR: simultaneous quantification of RNA, protein, and metabolite reaction dynamics for biomolecular network analysis.   Zenodo   2554066
Nikolaev et al (2019) Nat Methods   SRM used to measure nuclear protein concentrations to confirm measurements by SystemsNMR   PeptideAtlas   PASS01365
Denichenko et al (2019) Nat Commun   Specific inhibition of splicing factor activity by decoy RNA oligonucleotides   NCBI Gene Expression Omnibus   GSE126503
Denichenko et al (2019) Nat Commun   Specific inhibition of splicing factor activity by decoy RNA oligonucleotides   ProteomXchange data repository   PXD012564
Masliah et al (2018) EMBO J   Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex A)   Protein Data Bank   5N8M
Masliah et al (2018) EMBO J   Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex B)   Protein Data Bank   5N8L
Loughlin et al (2019) Mol Cell   SOLUTION STRUCTURE OF FUS-ZNF BOUND TO UGGUG   Proteopedia   6G99
Loughlin et al (2019) Mol Cell   SOLUTION STRUCTURE OF FUS-RRM BOUND TO STEM-LOOP RNA   Proteopedia   6GBM
Loughlin et al (2019) Mol Cell   Solution structure of FUS-ZnF bound to UGGUG   Biological Magnetic Resonance Data Bank   34258
Loughlin et al (2019) Mol Cell   Solution structure of FUS-RRM bound to stem-loop RNA   Biological Magnetic Resonance Data Bank   34259
Jutzi et al (2020) Nat Commun   Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III   Protein Data Bank   6SNJ
Jutzi et al (2020) Nat Commun   Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III   BMRB   34427
Jutzi et al (2020) Nat Commun   Transcriptome-wide identification of nuclear and cytoplasmic RNA-binding sites of FUS RBD-only constructs   NCBI Gene Expression Omnibus   GSE139263
Schütz et al (2018) Nat Commun   NMR Solution Structure of yeast TSR2(1-152)   Protein Data Bank   6G03
Schütz et al (2018) Nat Commun   NMR Solution Structure of Yeast TSR2(1-152) in Complex with S26A(100-119)   Protein Data Bank   6G04
Schütz et al (2018) Nat Commun   Molecular basis for RanGTP independent disassembly of an importin:ribosomal protein complex by the escortin Tsr2   ProteomXchange data repository   PXD009106
Loughlin et al (2019) Mol Cell   SOLUTION STRUCTURE OF FUS-ZNF BOUND TO UGGUG   Proteopedia   6G99
Loughlin et al (2019) Mol Cell   SOLUTION STRUCTURE OF FUS-RRM BOUND TO STEM-LOOP RNA   Proteopedia   6GBM
Loughlin et al (2019) Mol Cell   Solution structure of FUS-ZnF bound to UGGUG   Biological Magnetic Resonance Data Bank   34258
Loughlin et al (2019) Mol Cell   Solution structure of FUS-RRM bound to stem-loop RNA   Biological Magnetic Resonance Data Bank   34259
Sabath et al (2020) Nat Commun   Crystal structure of the human INTS13-INTS14 complex   Protein Data Bank   6SN1
Sabath et al (2020) Nat Commun   Characterization of Integrator module INTS10-INTS13-INTS14 and its connection to the cleavage module Part I   ProteomXchange data repository   PXD015682
Sabath et al (2020) Nat Commun   Characterization of Integrator module INTS10-INTS13-INTS14 and its connection to the cleavage module Part II   ProteomXchange data repository   PXD017996
Studer et al (2020) Proc. Natl. Acad. Sci. USA   Crystal structure of the human DEAH-helicase DHX15 in complex with the NKRF G-patch   Protein Data Bank   6SH7
Studer et al (2020) Proc. Natl. Acad. Sci. USA   Crystal structure of the human DEAH-helicase DHX15 in complex with the NKRF G-patch bound to ADP   Protein Data Bank   6SH6
Pandey et al (2020) Cell Rep   The mammalian cap-specific m6Am RNA methyltransferase PCIF1 regulates transcript levels in mouse tissue   NCBI Gene Expression Omnibus   GSE151229
Mendel et al (2018) Mol Cell   Methylation of structured RNA by the m6A writer METTL16 is essential for mouse embryonic development   NCBI Gene Expression Omnibus   GSE116329
Mendel et al (2018) Mol Cell   METTL16 MTase domain   Protein Data Bank   6GFN
Mendel et al (2018) Mol Cell   METTL16 MTase domain (crystal form 2)   Protein Data Bank   6GT5
Mendel et al (2018) Mol Cell   delta-N METTL16 MTase domain   Protein Data Bank   6GFK
Welte et al (2019) Genes Dev   The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1   NCBI Gene Expression Omnibus   GSE134125
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, composite map   Electron Microscopy Data Bank (EMDB)   EMD-11320
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, composite map   Protein Data Bank   6ZOJ
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on body   Electron Microscopy Data Bank (EMDB)   EMD-11321
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on body   Protein Data Bank   6ZOK
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on head   Electron Microscopy Data Bank (EMDB)   EMD-11322
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on head   Protein Data Bank   6ZOL
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1 bound to 43S Pre-initiation complex   Electron Microscopy Data Bank (EMDB)   EMD-11323
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1 bound to a translationally inactive 80S ribosome   Electron Microscopy Data Bank (EMDB)   EMD-11609
Karousis et al (2020) Nat Commun   Ribosome profiling under ABCE1 depletion to study aberrant translation termination   NCBI Gene Expression Omnibus   GSE143301
Annibaldis et al (2020) Nucleic Acids Res   Ribosome profiling under ABCE1 depletion to study aberrant translation termination   NCBI Gene Expression Omnibus   GSE143301
Ross et al (2020) Nat Chem Biol   PolyA-enriched RNA-seq of whole cell versus cytoplasmic fraction to assess read-through phenotype in compound-treated cells   NCBI Sequence Read Archive   SRP158650
Ross et al (2020) Nat Chem Biol   Cleavage and Polyadenylation Specificity Factor Subunit 3 (CPSF3) in complex with NVP-LTM531   Protein Data Bank   6M8Q
Pabis et al (2020) EMBO J   Crystal structure of Uba4 from Chaetomium thermophilum   Protein Data Bank   6YUB
Pabis et al (2020) EMBO J   Crystal structure of Uba4-Urm1 from Chaetomium thermophilum   Protein Data Bank   6YUC
Pabis et al (2020) EMBO J   Crystal structure of Uba4-Urm1 from Chaetomium thermophilum   Protein Data Bank   6Z6S
Pabis et al (2020) EMBO J   Molecular characterization of the eukaryotic Uba4/Urm1 system   ProteomXchange data repository   PXD015802
Boontanrart et al (2020) Cell Reports   ATF4 regulates MYB to increase g-globin in response to loss of ?-globin   NCBI Gene Expression Omnibus   GSE153768
Boneberg et al (2019) RNA   Crystal structure of murine DHX37 in complex with RNA   Protein Data Bank   6O16
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1   Electron Microscopy Data Bank (EMDB)   EMD-11517
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2   Electron Microscopy Data Bank (EMDB)   EMD-11518
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State G   Electron Microscopy Data Bank (EMDB)   EMD-11519
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1   Electron Microscopy Data Bank (EMDB)   EMD-11520
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2   Electron Microscopy Data Bank (EMDB)   EMD-11521
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1   Protein Data Bank   6ZXD
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2   Protein Data Bank   6ZXE
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State G   Protein Data Bank   6ZXF
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1   Protein Data Bank   6ZXG
Ameismeier et al (2020) Nature   Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2   Protein Data Bank   6ZXH
Miyake et al (2019) Nat Microbiol   Crystal structure of influenza A virus M1 N-terminal domain (G18A mutation)   Protein Data Bank   6I3H
Boneberg et al (2019) RNA   Crystal structure of murine DHX37 in complex with RNA   Protein Data Bank   6O16
Garcia-Doval et al (2020) Nat Commun   Enterococcus italicus Csm6 bound to cyclic hexa-2'-fluoro-hexa-dAMP   Protein Data Bank   6TUG
Pinto et al (2020) Science   Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase   Protein Data Bank   6RW0
Pinto et al (2020) Science   Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase, in complex with adenosine-2',3'-vanadate   Protein Data Bank   6RVZ
Panasenko et al (2019) Nature Struct Mol Biol   Yeast WT ribosome profiling sequences (Panasenko's project) - BioProject   NCBI Sequence Read Archive   PRJNA512900
Stuttfeld et al (2018) eLife   Architecture of the human mTORC2 core complex (C2)   Electron Microscopy Data Bank (EMDB)   EMD-3927
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2 focused on one half   Electron Microscopy Data Bank (EMDB)   EMD-11492
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2 overall refinement   Electron Microscopy Data Bank (EMDB)   EMD-11488
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2, focused on one half   Protein Data Bank   PDB ID 6ZWO
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2, overall refinement   Protein Data Bank   PDB ID 6ZWM
Scaiola et al (2020) Science Advances   cryo-EM structure of human mTOR complex 2 in absence of ATP-gamma-S   Electron Microscopy Data Bank (EMDB)   EMD-11489
Scaiola et al (2020) Science Advances   Human mTOR complex 2 with additional density close to the mLST8   Electron Microscopy Data Bank (EMDB)   EMD-11491
Scaiola et al (2020) Science Advances   Human mTOR complex 2 with additional density close to the mLST8   Electron Microscopy Data Bank (EMDB)   EMD-11490
van de Waterbeemd et al (2018) Nat Commun   Bottom-up and top-down LC-MS/MS of ribosomal purifications   ProteomXchange data repository   PXD008881
Scaiola et al (2018) EMBO J   Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit   Protein Data Bank   6FAI
Scaiola et al (2018) EMBO J   Xtructure of a eukaryotic cytoplasmic pre-40S ribosomal subunit   Electron Microscopy Data Bank (EMDB)   EMD?4214
Scaiola et al (2018) EMBO J   Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit classified for Rio2   Electron Microscopy Data Bank (EMDB)   EMD?4216
Scaiola et al (2018) EMBO J   Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit classified for Enp1   Electron Microscopy Data Bank (EMDB)   EMD?4217
Scaiola et al (2018) EMBO J   Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit classified for Dim1   Electron Microscopy Data Bank (EMDB)   EMD?4218
Scaiola et al (2018) EMBO J   Yeast 80S ribosome with an uncleaved 20S rRNA   Electron Microscopy Data Bank (EMDB)   EMD?4215
Kobayashi et al (2018) Science   Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex   Protein Data Bank   6FRK
Kobayashi et al (2018) Science   Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex   Electron Microscopy Data Bank (EMDB)   EMD-4300
Karousis et al (2020) Nat Commun   Ribosome profiling under ABCE1 depletion to study aberrant translation termination   NCBI Gene Expression Omnibus   GSE143301
Annibaldis et al (2020) Nucleic Acids Res   Ribosome profiling under ABCE1 depletion to study aberrant translation termination   NCBI Gene Expression Omnibus   GSE143301
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, composite map   Electron Microscopy Data Bank (EMDB)   EMD-11320
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, composite map   Protein Data Bank   6ZOJ
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on body   Electron Microscopy Data Bank (EMDB)   EMD-11321
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on body   Protein Data Bank   6ZOK
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on head   Electron Microscopy Data Bank (EMDB)   EMD-11322
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1-40S complex, focused on head   Protein Data Bank   6ZOL
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1 bound to 43S Pre-initiation complex   Electron Microscopy Data Bank (EMDB)   EMD-11323
Schubert, Karousis et al (2020) Nat Struct Mol Bio   SARS-CoV-2-Nsp1 bound to a translationally inactive 80S ribosome   Electron Microscopy Data Bank (EMDB)   EMD-11609
Gruber et al (2018) Genome Biol   A-seq2 of HeLa   NCBI Sequence Read Archive   SRP115462
Arpat et al (2020) Genome Res   Transcriptome-wide sites of collided ribosomes reveal sequence determinants of translational pausing in vivo   NCBI Gene Expression Omnibus   GSE134541
Tuck et al (2020) Mol Cell   Mammalian RNA decay pathways are highly specialized and widely linked to translation   NCBI Gene Expression Omnibus   GSE134020
Castelo-Szekely et al (2019) Nucleic Acids Res   DENR-regulated reinitiation events uncover predictive uORF features and links to circadian timekeeping via Clock regulation   NCBI Gene Expression Omnibus   GSE124793
Wang et al (2020) Nature   Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs   Array Express   E-MTAB-7247
Fricker et al (2019) Nat Commun   Profiling of ribosome-associated small RNAs in Trypanosoma brucei   European Nucleotide Archive (ENA)   PRJEB24915
Shankar et al (2020) Nucleic Acids Res   mSeq of total and polysome bound mRNAs in two yeast strains   NCBI Gene Expression Omnibus   GSE134774
Wyss et al (2018) Scientific Reports   Identification of ribosome-associated ncRNAs (rancRNAs) in Haloferax volcanii   European Nucleotide Archive (ENA)   PRJEB25902
Fricker et al (2019) Nat Commun   Profiling of ribosome-associated small RNAs in Trypanosoma brucei   European Nucleotide Archive (ENA)   PRJEB24915
Jaskolowski et al (2020) Mol Cell   State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate   Electron Microscopy Data Bank (EMDB)   EMD-10999
Jaskolowski et al (2020) Mol Cell   State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate   Electron Microscopy Data Bank (EMDB)   EMD-11000
Jaskolowski et al (2020) Mol Cell   State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate   Protein Data Bank   6YXX
Jaskolowski et al (2020) Mol Cell   State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate   Protein Data Bank   6YXY
Saurer et al (2019) Science   Head domain of the mt-SSU assemblosome from Trypanosoma brucei   Protein Data Bank   6SG9
Saurer et al (2019) Science   Body domain of the mt-SSU assemblosome from Trypanosoma brucei   Protein Data Bank   6SGA
Saurer et al (2019) Science   mt-SSU assemblosome of Trypanosoma brucei   Protein Data Bank   6SGB
Saurer et al (2019) Science   Head domain of the mt-SSU assemblosome from Trypanosoma brucei   Electron Microscopy Data Bank (EMDB)   EMD-10175
Saurer et al (2019) Science   Body domain of the mt-SSU assemblosome from Trypanosoma brucei   Electron Microscopy Data Bank (EMDB)   EMD-10177
Saurer et al (2019) Science   mt-SSU assemblosome of Trypanosoma brucei   Electron Microscopy Data Bank (EMDB)   EMD-10180
Saurer et al (2019) Science   mt-SSU assemblosome of wild-type Trypanosoma brucei brucei   Electron Microscopy Data Bank (EMDB)   EMD-10176 
Saurer et al (2019) Science   mt-SSU middle assembly intermediate of wild-type Trypanosoma brucei brucei   Electron Microscopy Data Bank (EMDB)   EMD-10178
Saurer et al (2019) Science   mt-SSU late assembly intermediate of wild-type Trypanosoma brucei brucei   Electron Microscopy Data Bank (EMDB)   EMD-10179
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome   Electron Microscopy Data Bank (EMDB)   EMD-0229
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome   Protein Data Bank   6HIV
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3   Electron Microscopy Data Bank (EMDB)   EMD-0230
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3   Protein Data Bank   6HIW
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the large mitoribosomal subunit   Electron Microscopy Data Bank (EMDB)   EMD-0231
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the large mitoribosomal subunit   Protein Data Bank   6HIX
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3   Electron Microscopy Data Bank (EMDB)   EMD-0232
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3   Protein Data Bank   6HIY
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit   Electron Microscopy Data Bank (EMDB)   EMD-0233
Ramrath et al (2018) Science   Cryo-EM structure of the Trypanosoma brucei mitochond   Protein Data Bank   6HIZ
Kummer et al (2020) EMBO J   55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)   Electron Microscopy Data Bank (EMDB)   EMD-10779
Kummer et al (2020) EMBO J   55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)   Electron Microscopy Data Bank (EMDB)   EMD-10778
Kummer et al (2020) EMBO J   55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)   Protein Data Bank   6YDW
Kummer et al (2020) EMBO J   55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)   Protein Data Bank   6YDP
Kummer et al (2018) Nature   Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit   Protein Data Bank   6GAZ
Kummer et al (2018) Nature   Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.   Electron Microscopy Data Bank (EMDB)   EMD-4369
Kummer et al (2018) Nature   Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit   Protein Data Bank   6GB2
Kummer et al (2018) Nature   Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.   Electron Microscopy Data Bank (EMDB)   EMD-4370
Kummer et al (2018) Nature   Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome   Protein Data Bank   6GAW
Kummer et al (2018) Nature   Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.   Electron Microscopy Data Bank (EMDB)   EMD-4368
Wang et al (2019) Nat Struct Mol Bio   Ribosome nascent chain in complex with SecA   Electron Microscopy Data Bank (EMDB)   EMD-10073 
Wang et al (2019) Nat Struct Mol Bio   SecA in complex with ribosome nascent chain   Electron Microscopy Data Bank (EMDB)   EMD-10074
Wang et al (2019) Nat Struct Mol Bio   Ribosome nascent chain in complex with SecA   Protein Data Bank   6S0K
Gamerdinger et al (2019) Mol Cell   C.elegans NAC-ribosomal 60S complex   Electron Microscopy Data Bank (EMDB)   EMD-4938
Gamerdinger et al (2019) Mol Cell   Early Scanning of Nascent Polypeptides inside the Ribosomal Tunnel by NAC   ProteomXchange data repository   PXD011995
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Kroupova et al (2021) eLife   Human RNA ligase RTCB in complex with GMP and Co(II)   Protein Data Bank   7P3B
Kroupova et al (2021) eLife   Molecular architecture of the human tRNA ligase complex   ProteomXchange data repository   PXD025662
Krauer et al (2021) Noncoding RNA   Hold for release   ProteomXchange data repository   PXD029751
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Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 2, DEPt-bound subset local refinement   Protein Data Bank   7PE9
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 1, overall refinement   Protein Data Bank   7PEA
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 1, focussed on one protomer   Protein Data Bank   7PEB
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement   Protein Data Bank   7PEC
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Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 2, focussed on one protomer   Electron Microscopy Data Bank (EMDB)   EMD-13348
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 2, DEPt-bound subset local refinement   Electron Microscopy Data Bank (EMDB)   EMD-13349
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 1, overall refinement   Electron Microscopy Data Bank (EMDB)   EMD-13350
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 1, focussed on one protomer   Electron Microscopy Data Bank (EMDB)   EMD-13351
Wälchli et al (2021) eLife   cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement   Electron Microscopy Data Bank (EMDB)   EMD-13352
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Jomaa et al (2021) Cell Rep   SRP-SR at the distal site conformation   Electron Microscopy Data Bank (EMDB)   EMD-12799
Jomaa et al (2021) Cell Rep   RNC-SRP-SR complex   Electron Microscopy Data Bank (EMDB)   EMD-12800
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Reuther, Schneider et al (2021) RNA Biol   rancRNA_18 processing and classification   Electron Microscopy Data Bank (EMDB)   EMD-12988
Title et al (2021) Mol Metab   RNA sequencing of WT and Zeb1200M islets   Array Express   E-MTAB-10535
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Stephan, Ries et al (2021) Nucleic Acids Res   Ribosomal methyltransferase KsgA bound to small ribosomal subunit   Electron Microscopy Data Bank (EMDB)   EMD-12736
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)   Protein Data Bank   7O7Y
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)   Protein Data Bank   7O7Z
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site   Protein Data Bank   7O80
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot   Protein Data Bank   7O81
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)   Electron Microscopy Data Bank (EMDB)   EMD-12756
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)   Electron Microscopy Data Bank (EMDB)   EMD-12757
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site   Electron Microscopy Data Bank (EMDB)   EMD-12758
Bhatt, Scaiola et al (2021) Science   Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot   Electron Microscopy Data Bank (EMDB)   EMD-12759
Bhatt, Scaiola et al (2021) Science   Disome of rabbit ribosomes with the leading one stalled by the SARS-CoV-2 pseudoknot   Electron Microscopy Data Bank (EMDB)   EMD-12760
Bhatt, Scaiola et al (2021) Science   Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome   NCBI Gene Expression Omnibus   GSE167421
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Sahadevan, Hembach et al (2021) Nat Commun   E-MTAB-9212 - Mutant FUS triggers age-dependent synaptic impairment in presymptomatic ALS-FUS mice (RNA-seq)   Array Express   E-MTAB-9212
Sahadevan, Hembach et al (2021) Nat Commun   E-MTAB-10104 - Mutant FUS triggers age-dependent synaptic impairment in presymptomatic ALS-FUS mice (RNA-seq part2)   Array Express   E-MTAB-10104
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Lee, Jomaa et al (2021) Sci Adv   Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A   Electron Microscopy Data Bank (EMDB)   EMD-12303
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Bhaskar et al (2021) Cell Rep   Structure of human ribosome in hybrid-PRE state   Protein Data Bank   6Y57
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Bhaskar et al (2021) Cell Rep   Structure of human ribosome in classical-PRE state   Electron Microscopy Data Bank (EMDB)   EMD-10668
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Bhaskar et al (2021) Cell Rep   Cryo-EM map of human ribosome in POST state   Electron Microscopy Data Bank (EMDB)   EMD-10674
Mendel et al (2021) Cell   RNA m6A methylation of 3? splice site prevents binding of U2AF35 to inhibit splicing   NCBI Gene Expression Omnibus   GSE146873
Mendel et al (2021) Cell   Splice site m6A methylation prevents binding of U2AF35 to inhibit RNA splicing   Mendeley Data   s92zgtbhjp
Plassart, Shayan et al (2021) eLife   Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)   Protein Data Bank   6ZUO
Plassart, Shayan et al (2021) eLife   Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)   Protein Data Bank   6ZV6
Plassart, Shayan et al (2021) eLife   Human RIO1(kd)-StHA late pre-40S particle structural state A (pre 18S rRNA cleavage)   Electron Microscopy Data Bank (EMDB)   EMD-11440
Plassart, Shayan et al (2021) eLife   Human RIO1(kd)-StHA late pre-40S particle structural state B (post 18S rRNA cleavage)   Electron Microscopy Data Bank (EMDB)   EMD-11441
Plassart, Shayan et al (2021) eLife   Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A head   Electron Microscopy Data Bank (EMDB)   EMD-11446
Plassart, Shayan et al (2021) eLife   Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A body   Electron Microscopy Data Bank (EMDB)   EMD-11445
Plassart, Shayan et al (2021) eLife   Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A platform   Electron Microscopy Data Bank (EMDB)   EMD-11447
Plassart, Shayan et al (2021) eLife   Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural State B Head   Electron Microscopy Data Bank (EMDB)   EMD-11443
Plassart, Shayan et al (2021) eLife   Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural State B Body   Electron Microscopy Data Bank (EMDB)   EMD-11442
Plassart, Shayan et al (2021) eLife   Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state B platform   Electron Microscopy Data Bank (EMDB)   EMD-11444
Plassart, Shayan et al (2021) eLife   Proteomics analysis of human pre-40S ribosomal particles   PRIDE   PXD019270
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Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet   Protein Data Bank   7NQL
Kummer et al (2021) Mol Cell   39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2   Protein Data Bank   7NSH
Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)   Protein Data Bank   7NSI
Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)   Protein Data Bank   7NSJ
Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet   Electron Microscopy Data Bank (EMDB)   EMD-12527
Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet   Electron Microscopy Data Bank (EMDB)   EMD-12529
Kummer et al (2021) Mol Cell   39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2   Electron Microscopy Data Bank (EMDB)   EMD-12567
Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)   Electron Microscopy Data Bank (EMDB)   EMD-12568
Kummer et al (2021) Mol Cell   55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)   Electron Microscopy Data Bank (EMDB)   EMD-12569
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Gudipati et al (2021) Mol Cell   Protease-mediated processing of Argonaute proteins controls small RNA association   NCBI Gene Expression Omnibus   GSE151717
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Jomaa, Gamerdinger, Hsieh et al (2022) Science   Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC   Protein Data Bank   7QWR
Jomaa, Gamerdinger, Hsieh et al (2022) Science   Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC   Protein Data Bank   7QWS
Jomaa, Gamerdinger, Hsieh et al (2022) Science   Ternary complex of ribosome nascent chain with SRP and NAC   Electron Microscopy Data Bank (EMDB)   EMD-14191
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Dewar et al (2022) J Biol Chem   Characterisation of a highly diverged putative mitochondrial ATP synthase peripheral stalk subunit b in Trypanosoma brucei   ProteomXchange data repository   PXD031259
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Hersch et al (2022) BMC Bioinformatics   mESCs, BR2_WT_10min_tot   NCBI Gene Expression Omnibus   GSM4255973
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Dewar et al (2022) Nat Commun   Release of a nuclear ubiquitin-like protein activates proteasomal degradation of mislocalized hydrophobic mitochondrial proteins in trypanosomes   ProteomXchange data repository   PXD031888
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Bechara et al (2022) RNA   Paramecium tetraurelia lnc1 lncRNA gene, complete sequence   NCBI GenBank   OL962699
Bechara et al (2022) RNA   Paramecium tetraurelia lnc3 lncRNA gene, complete sequence   NCBI GenBank   OL962700
Bechara et al (2022) RNA   Paramecium tetraurelia lnc7 lncRNA gene, complete sequence   NCBI GenBank   OL962701
Bechara et al (2022) RNA   Paramecium tetraurelia lnc13 lncRNA gene, complete sequence   NCBI GenBank   OL962702
Bechara et al (2022) RNA   Paramecium tetraurelia lnc14 lncRNA gene, complete sequence   NCBI GenBank   OL962703
Bechara et al (2022) RNA   Paramecium tetraurelia lnc15 lncRNA gene, complete sequence   NCBI GenBank   OL962704
Bechara et al (2022) RNA   Paramecium tetraurelia lnc24 lncRNA gene, complete sequence   NCBI GenBank   OL962705
Bechara et al (2022) RNA   Paramecium tetraurelia lnc32 lncRNA gene, complete sequence   NCBI GenBank   OL962706
Bechara et al (2022) RNA   Paramecium tetraurelia lnc34 lncRNA gene, complete sequence   NCBI GenBank   OL962707
Bechara et al (2022) RNA   Paramecium tetraurelia lnc35 lncRNA gene, complete sequence   NCBI GenBank   OL962708
Bechara et al (2022) RNA   Paramecium tetraurelia lnc36 lncRNA gene, complete sequence   NCBI GenBank   OL962709
Bechara et al (2022) RNA   Paramecium tetraurelia lnc37 lncRNA gene, complete sequence   NCBI GenBank   OL962710
Bechara et al (2022) RNA   Paramecium tetraurelia lnc38 lncRNA gene, complete sequence   NCBI GenBank   OL962711
Bechara et al (2022) RNA   Paramecium tetraurelia lnc39 lncRNA gene, complete sequence   NCBI GenBank   OL962712
Bechara et al (2022) RNA   Paramecium tetraurelia lnc40 lncRNA gene, complete sequence   NCBI GenBank   OL962713
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Schaefer, Nabih et al (2022) EMBO Rep.   Transcriptomes of miR-290-295 KO mESCs treated with siPOOLs against the transcription factor Tfap4   NCBI GenBank   GSE181393
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