| Citation | Dataset_title | Database | Persistent_ID | |||
|---|---|---|---|---|---|---|
| LaPierre et al (2021) Endocrinology | MicroRNA-7a2 regulates prolactin in developing lactotrophs and prolactinoma cells | European Nucleotide Archive | PRJEB39159 | |||
| Stuttfeld et al (2018) eLife | Architecture of the human mTORC2 core complex (C2) | EMDataResource | EMD-3927 | |||
| Liko et al (2020) Proc Natl Acad USA | Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs | NCBI Gene Expression Omnibus | GSE141361 | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2 focused on one half | EMDataResource | EMD-11492 | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2 overall refinement | EMDataResource | EMD-11488 | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2, focused on one half | Protein Data Bank | 6ZWO | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2, overall refinement | Protein Data Bank | 6ZWM | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2 in absence of ATP-gamma-S | EMDataResource | EMD-11489 | |||
| Scaiola et al (2020) Science Advances | Human mTOR complex 2 with additional density close to the mLST8 | EMDataResource | EMD-11491 | |||
| Scaiola et al (2020) Science Advances | Human mTOR complex 2 with additional density close to the mLST8 | EMDataResource | EMD-11490 | |||
| Nikolaou et al (2019) Cell Rep | Differential splicing analysis of liver-specific A1cf knock-out mice - BioProject | NCBI Sequence Read Archive | PRJNA530736 | |||
| Nikolaou et al (2019) Cell Rep | PAR-CLIP of A1cf in mouse liver - BioProject | NCBI Sequence Read Archive | PRJNA531626 | |||
| Kobiita et al (2020) Cell Rep | RNA-seq of isolated pancreatic islets from beta-cell-specific Jazf1 knock-out mice - BioProject | NCBI Sequence Read Archive | PRJNA595139 | |||
| Kobiita et al (2020) Cell Rep | ChIP-seq data set | NCBI Sequence Read Archive | PRJNA595471 | |||
| Singh et al (2018) PLoS One | DNA 5-methylcytosine in Paramecium | NCBI Gene Expression Omnibus | GSE111621 | |||
| Glousker et al (2020) EMBO J | Human POT1 Prevents Severe Telomere Damage Instability Induced by Homology Directed DNA Repair | ProteomXchange data repository | PXD016826 | |||
| Majerska et al (2018) Life Sci Alliance | Transformation-induced stress at telomeres is counteracted through changes in the telomeric proteome including SAMHD1 | ProteomXchange data repository | PXD010088 | |||
| Bracher et al (2020) Biomolecules | mSeq of vtRNA1.1 and vtRNA1.3 knockout or control cells in standard and starvation condition | NCBI Gene Expression Omnibus | GSE147054 | |||
| Welte et al (2019) Genes Dev | The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1 | NCBI Gene Expression Omnibus | GSE134125 | |||
| Tuck et al (2020) Mol Cell | Mammalian RNA decay pathways are highly specialized and widely linked to translation | NCBI Gene Expression Omnibus | GSE134020 | |||
| Knuckles et al (2018) Genes Dev | Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA binding factor Rbm15/Spenito to other components of the m6A machinery | NCBI Gene Expression Omnibus | GSE106614 | |||
| Tuck et al (2018) Life Sci Alliance | Deconstructing lincRNA regulation during ESC to NPC differentiation | NCBI Gene Expression Omnibus | GSE107493 | |||
| Biasini et al (2020) EMBO J | Translation is required for miRNA-dependent decay of endogenous transcripts. | NCBI Gene Expression Omnibus | GSE143277 | |||
| Dalcher et al (2020) EMBO J | BAZ2A safeguards genome architecture of ground-state pluripotent stem cells | NCBI Gene Expression Omnibus | GSE112222 | |||
| Tan et al (2020) Life Sci Alliance | 4sU metabolic labeled transcripts in mESCs | NCBI Gene Expression Omnibus | GSE111951 | |||
| Ruiz Buendia et al (2020) Science Advances | Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion | NCBI Gene Expression Omnibus | GSE148185 | |||
| Guay et al (2020) Scientific Reports | Loss-of-function of the long non-coding RNA A830019P07Rik in mice does not affect insulin expression and secretion | NCBI Gene Expression Omnibus | GSE137389 | |||
| Coe et al (2019) PLoS Genetics | RNA-seq analysis of SKMEL28 melanoma cells following DIRC3 and IGFBP5 ASO knockdown | NCBI Gene Expression Omnibus | GSE129467 | |||
| Coe et al (2019) PLoS Genetics | The MITF-SOX10 regulated long non-coding RNA DIRC3 is a melanoma tumour suppressor | NCBI Gene Expression Omnibus | GSE129078 | |||
| Emming, Bianchi et al (2020) Nature Immunology | A molecular network regulating the proinflammatory phenotype of human memory T lymphocytes | NCBI Gene Expression Omnibus | GSE122946 | |||
| Dalcher et al (2020) EMBO J | BAZ2A safeguards genome architecture of ground-state pluripotent stem cells | NCBI Gene Expression Omnibus | GSE112222 | |||
| Ngondo et al (2018) Stem Cell Reports | Transcriptome of WT mouse embryonic stem cells | NCBI Gene Expression Omnibus | GSE78971 | |||
| Ngondo et al (2018) Stem Cell Reports | Roles of Argonaute protein in mouse embryonic stem cells | NCBI Gene Expression Omnibus | GSE80454 | |||
| Biasini et al (2020) EMBO J | Translation is required for miRNA-dependent decay of endogenous transcripts. | NCBI Gene Expression Omnibus | GSE143277 | |||
| Ghosh et al (2020) EMBO J | AGO1x prevents dsRNA-induced interferon signaling to promote breast cancer cell proliferation | NCBI Bioproject | PRJNA447929 | |||
| Ghosh et al (2020) EMBO J | AGO1x stop codon readthrough isoform | ProteomXchange data repository | PXD009401 | |||
| Liko et al (2020) Proc Natl Acad USA | Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs | NCBI Gene Expression Omnibus | GSE141361 | |||
| Guimaraes et al (2020) Genome Biol | A rare-codon-based translational program of cell proliferation | NCBI Bioproject | PRJNA472989 | |||
| Guimaraes et al (2020) Genome Biol | A rare-codon-based translational program of cell proliferation | ProteomXchange data repository | PXD016034 | |||
| Pandey et al (2018) Cell Rep | Exonuclease domain-containing 1 enhances MIWI2 piRNA biogenesis via its interaction with TDRD12 | NCBI Gene Expression Omnibus | GSE119447 | |||
| Campagne et al (2019) Nat Chem Biol | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 | Biological Magnetic Resonance Data Bank | 34311 | |||
| Campagne et al (2019) Nat Chem Biol | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier | Biological Magnetic Resonance Data Bank | 34312 | |||
| Campagne et al (2019) Nat Chem Biol | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 | Protein Data Bank | 6HMI | |||
| Campagne et al (2019) Nat Chem Biol | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier | Protein Data Bank | 6HMO | |||
| Cléry et al (2021) Nat Commun | Structure of human SRSF1 RRM1 bound to AACAAA RNA | Protein Data Bank | 6HPJ | |||
| Ripin et al (2019) PNAS | Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM | Protein Data Bank | 6GC5 | |||
| Nikolaev et al (2019) Nat Methods | Data for the Systems NMR: simultaneous quantification of RNA, protein, and metabolite reaction dynamics for biomolecular network analysis. | Zenodo | 2554066 | |||
| Nikolaev et al (2019) Nat Methods | SRM used to measure nuclear protein concentrations to confirm measurements by SystemsNMR | PeptideAtlas | PASS01365 | |||
| Denichenko et al (2019) Nat Commun | Specific inhibition of splicing factor activity by decoy RNA oligonucleotides | NCBI Gene Expression Omnibus | GSE126503 | |||
| Denichenko et al (2019) Nat Commun | Specific inhibition of splicing factor activity by decoy RNA oligonucleotides | ProteomXchange data repository | PXD012564 | |||
| Masliah et al (2018) EMBO J | Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex A) | Protein Data Bank | 5N8M | |||
| Masliah et al (2018) EMBO J | Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex B) | Protein Data Bank | 5N8L | |||
| Loughlin et al (2019) Mol Cell | SOLUTION STRUCTURE OF FUS-ZNF BOUND TO UGGUG | Proteopedia | 6G99 | |||
| Loughlin et al (2019) Mol Cell | SOLUTION STRUCTURE OF FUS-RRM BOUND TO STEM-LOOP RNA | Proteopedia | 6GBM | |||
| Loughlin et al (2019) Mol Cell | Solution structure of FUS-ZnF bound to UGGUG | Biological Magnetic Resonance Data Bank | 34258 | |||
| Loughlin et al (2019) Mol Cell | Solution structure of FUS-RRM bound to stem-loop RNA | Biological Magnetic Resonance Data Bank | 34259 | |||
| Jutzi et al (2020) Nat Commun | Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III | Protein Data Bank | 6SNJ | |||
| Jutzi et al (2020) Nat Commun | Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III | BMRB | 34427 | |||
| Jutzi et al (2020) Nat Commun | Transcriptome-wide identification of nuclear and cytoplasmic RNA-binding sites of FUS RBD-only constructs | NCBI Gene Expression Omnibus | GSE139263 | |||
| Schütz et al (2018) Nat Commun | NMR Solution Structure of yeast TSR2(1-152) | Protein Data Bank | 6G03 | |||
| Schütz et al (2018) Nat Commun | NMR Solution Structure of Yeast TSR2(1-152) in Complex with S26A(100-119) | Protein Data Bank | 6G04 | |||
| Schütz et al (2018) Nat Commun | Molecular basis for RanGTP independent disassembly of an importin:ribosomal protein complex by the escortin Tsr2 | ProteomXchange data repository | PXD009106 | |||
| Loughlin et al (2019) Mol Cell | SOLUTION STRUCTURE OF FUS-ZNF BOUND TO UGGUG | Proteopedia | 6G99 | |||
| Loughlin et al (2019) Mol Cell | SOLUTION STRUCTURE OF FUS-RRM BOUND TO STEM-LOOP RNA | Proteopedia | 6GBM | |||
| Loughlin et al (2019) Mol Cell | Solution structure of FUS-ZnF bound to UGGUG | Biological Magnetic Resonance Data Bank | 34258 | |||
| Loughlin et al (2019) Mol Cell | Solution structure of FUS-RRM bound to stem-loop RNA | Biological Magnetic Resonance Data Bank | 34259 | |||
| Sabath et al (2020) Nat Commun | Crystal structure of the human INTS13-INTS14 complex | Protein Data Bank | 6SN1 | |||
| Sabath et al (2020) Nat Commun | Characterization of Integrator module INTS10-INTS13-INTS14 and its connection to the cleavage module Part I | ProteomXchange data repository | PXD015682 | |||
| Sabath et al (2020) Nat Commun | Characterization of Integrator module INTS10-INTS13-INTS14 and its connection to the cleavage module Part II | ProteomXchange data repository | PXD017996 | |||
| Studer et al (2020) Proc. Natl. Acad. Sci. USA | Crystal structure of the human DEAH-helicase DHX15 in complex with the NKRF G-patch | Protein Data Bank | 6SH7 | |||
| Studer et al (2020) Proc. Natl. Acad. Sci. USA | Crystal structure of the human DEAH-helicase DHX15 in complex with the NKRF G-patch bound to ADP | Protein Data Bank | 6SH6 | |||
| Pandey et al (2020) Cell Rep | The mammalian cap-specific m6Am RNA methyltransferase PCIF1 regulates transcript levels in mouse tissue | NCBI Gene Expression Omnibus | GSE151229 | |||
| Mendel et al (2018) Mol Cell | Methylation of structured RNA by the m6A writer METTL16 is essential for mouse embryonic development | NCBI Gene Expression Omnibus | GSE116329 | |||
| Mendel et al (2018) Mol Cell | METTL16 MTase domain | Protein Data Bank | 6GFN | |||
| Mendel et al (2018) Mol Cell | METTL16 MTase domain (crystal form 2) | Protein Data Bank | 6GT5 | |||
| Mendel et al (2018) Mol Cell | delta-N METTL16 MTase domain | Protein Data Bank | 6GFK | |||
| Welte et al (2019) Genes Dev | The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1 | NCBI Gene Expression Omnibus | GSE134125 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, composite map | Electron Microscopy Data Bank (EMDB) | EMD-11320 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, composite map | Protein Data Bank | 6ZOJ | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on body | Electron Microscopy Data Bank (EMDB) | EMD-11321 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on body | Protein Data Bank | 6ZOK | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on head | Electron Microscopy Data Bank (EMDB) | EMD-11322 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on head | Protein Data Bank | 6ZOL | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1 bound to 43S Pre-initiation complex | Electron Microscopy Data Bank (EMDB) | EMD-11323 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1 bound to a translationally inactive 80S ribosome | Electron Microscopy Data Bank (EMDB) | EMD-11609 | |||
| Karousis et al (2020) Nat Commun | Ribosome profiling under ABCE1 depletion to study aberrant translation termination | NCBI Gene Expression Omnibus | GSE143301 | |||
| Annibaldis et al (2020) Nucleic Acids Res | Ribosome profiling under ABCE1 depletion to study aberrant translation termination | NCBI Gene Expression Omnibus | GSE143301 | |||
| Ross et al (2020) Nat Chem Biol | PolyA-enriched RNA-seq of whole cell versus cytoplasmic fraction to assess read-through phenotype in compound-treated cells | NCBI Sequence Read Archive | SRP158650 | |||
| Ross et al (2020) Nat Chem Biol | Cleavage and Polyadenylation Specificity Factor Subunit 3 (CPSF3) in complex with NVP-LTM531 | Protein Data Bank | 6M8Q | |||
| Pabis et al (2020) EMBO J | Crystal structure of Uba4 from Chaetomium thermophilum | Protein Data Bank | 6YUB | |||
| Pabis et al (2020) EMBO J | Crystal structure of Uba4-Urm1 from Chaetomium thermophilum | Protein Data Bank | 6YUC | |||
| Pabis et al (2020) EMBO J | Crystal structure of Uba4-Urm1 from Chaetomium thermophilum | Protein Data Bank | 6Z6S | |||
| Pabis et al (2020) EMBO J | Molecular characterization of the eukaryotic Uba4/Urm1 system | ProteomXchange data repository | PXD015802 | |||
| Boontanrart et al (2020) Cell Reports | ATF4 regulates MYB to increase g-globin in response to loss of ?-globin | NCBI Gene Expression Omnibus | GSE153768 | |||
| Boneberg et al (2019) RNA | Crystal structure of murine DHX37 in complex with RNA | Protein Data Bank | 6O16 | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1 | Electron Microscopy Data Bank (EMDB) | EMD-11517 | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 | Electron Microscopy Data Bank (EMDB) | EMD-11518 | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State G | Electron Microscopy Data Bank (EMDB) | EMD-11519 | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 | Electron Microscopy Data Bank (EMDB) | EMD-11520 | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 | Electron Microscopy Data Bank (EMDB) | EMD-11521 | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1 | Protein Data Bank | 6ZXD | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 | Protein Data Bank | 6ZXE | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State G | Protein Data Bank | 6ZXF | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 | Protein Data Bank | 6ZXG | |||
| Ameismeier et al (2020) Nature | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 | Protein Data Bank | 6ZXH | |||
| Miyake et al (2019) Nat Microbiol | Crystal structure of influenza A virus M1 N-terminal domain (G18A mutation) | Protein Data Bank | 6I3H | |||
| Boneberg et al (2019) RNA | Crystal structure of murine DHX37 in complex with RNA | Protein Data Bank | 6O16 | |||
| Garcia-Doval et al (2020) Nat Commun | Enterococcus italicus Csm6 bound to cyclic hexa-2'-fluoro-hexa-dAMP | Protein Data Bank | 6TUG | |||
| Pinto et al (2020) Science | Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase | Protein Data Bank | 6RW0 | |||
| Pinto et al (2020) Science | Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase, in complex with adenosine-2',3'-vanadate | Protein Data Bank | 6RVZ | |||
| Panasenko et al (2019) Nature Struct Mol Biol | Yeast WT ribosome profiling sequences (Panasenko's project) - BioProject | NCBI Sequence Read Archive | PRJNA512900 | |||
| Stuttfeld et al (2018) eLife | Architecture of the human mTORC2 core complex (C2) | Electron Microscopy Data Bank (EMDB) | EMD-3927 | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2 focused on one half | Electron Microscopy Data Bank (EMDB) | EMD-11492 | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2 overall refinement | Electron Microscopy Data Bank (EMDB) | EMD-11488 | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2, focused on one half | Protein Data Bank | PDB ID 6ZWO | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2, overall refinement | Protein Data Bank | PDB ID 6ZWM | |||
| Scaiola et al (2020) Science Advances | cryo-EM structure of human mTOR complex 2 in absence of ATP-gamma-S | Electron Microscopy Data Bank (EMDB) | EMD-11489 | |||
| Scaiola et al (2020) Science Advances | Human mTOR complex 2 with additional density close to the mLST8 | Electron Microscopy Data Bank (EMDB) | EMD-11491 | |||
| Scaiola et al (2020) Science Advances | Human mTOR complex 2 with additional density close to the mLST8 | Electron Microscopy Data Bank (EMDB) | EMD-11490 | |||
| van de Waterbeemd et al (2018) Nat Commun | Bottom-up and top-down LC-MS/MS of ribosomal purifications | ProteomXchange data repository | PXD008881 | |||
| Scaiola et al (2018) EMBO J | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | Protein Data Bank | 6FAI | |||
| Scaiola et al (2018) EMBO J | Xtructure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | Electron Microscopy Data Bank (EMDB) | EMD?4214 | |||
| Scaiola et al (2018) EMBO J | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit classified for Rio2 | Electron Microscopy Data Bank (EMDB) | EMD?4216 | |||
| Scaiola et al (2018) EMBO J | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit classified for Enp1 | Electron Microscopy Data Bank (EMDB) | EMD?4217 | |||
| Scaiola et al (2018) EMBO J | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit classified for Dim1 | Electron Microscopy Data Bank (EMDB) | EMD?4218 | |||
| Scaiola et al (2018) EMBO J | Yeast 80S ribosome with an uncleaved 20S rRNA | Electron Microscopy Data Bank (EMDB) | EMD?4215 | |||
| Kobayashi et al (2018) Science | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Protein Data Bank | 6FRK | |||
| Kobayashi et al (2018) Science | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Electron Microscopy Data Bank (EMDB) | EMD-4300 | |||
| Karousis et al (2020) Nat Commun | Ribosome profiling under ABCE1 depletion to study aberrant translation termination | NCBI Gene Expression Omnibus | GSE143301 | |||
| Annibaldis et al (2020) Nucleic Acids Res | Ribosome profiling under ABCE1 depletion to study aberrant translation termination | NCBI Gene Expression Omnibus | GSE143301 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, composite map | Electron Microscopy Data Bank (EMDB) | EMD-11320 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, composite map | Protein Data Bank | 6ZOJ | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on body | Electron Microscopy Data Bank (EMDB) | EMD-11321 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on body | Protein Data Bank | 6ZOK | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on head | Electron Microscopy Data Bank (EMDB) | EMD-11322 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1-40S complex, focused on head | Protein Data Bank | 6ZOL | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1 bound to 43S Pre-initiation complex | Electron Microscopy Data Bank (EMDB) | EMD-11323 | |||
| Schubert, Karousis et al (2020) Nat Struct Mol Bio | SARS-CoV-2-Nsp1 bound to a translationally inactive 80S ribosome | Electron Microscopy Data Bank (EMDB) | EMD-11609 | |||
| Gruber et al (2018) Genome Biol | A-seq2 of HeLa | NCBI Sequence Read Archive | SRP115462 | |||
| Arpat et al (2020) Genome Res | Transcriptome-wide sites of collided ribosomes reveal sequence determinants of translational pausing in vivo | NCBI Gene Expression Omnibus | GSE134541 | |||
| Tuck et al (2020) Mol Cell | Mammalian RNA decay pathways are highly specialized and widely linked to translation | NCBI Gene Expression Omnibus | GSE134020 | |||
| Castelo-Szekely et al (2019) Nucleic Acids Res | DENR-regulated reinitiation events uncover predictive uORF features and links to circadian timekeeping via Clock regulation | NCBI Gene Expression Omnibus | GSE124793 | |||
| Wang et al (2020) Nature | Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs | Array Express | E-MTAB-7247 | |||
| Fricker et al (2019) Nat Commun | Profiling of ribosome-associated small RNAs in Trypanosoma brucei | European Nucleotide Archive (ENA) | PRJEB24915 | |||
| Shankar et al (2020) Nucleic Acids Res | mSeq of total and polysome bound mRNAs in two yeast strains | NCBI Gene Expression Omnibus | GSE134774 | |||
| Wyss et al (2018) Scientific Reports | Identification of ribosome-associated ncRNAs (rancRNAs) in Haloferax volcanii | European Nucleotide Archive (ENA) | PRJEB25902 | |||
| Fricker et al (2019) Nat Commun | Profiling of ribosome-associated small RNAs in Trypanosoma brucei | European Nucleotide Archive (ENA) | PRJEB24915 | |||
| Jaskolowski et al (2020) Mol Cell | State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate | Electron Microscopy Data Bank (EMDB) | EMD-10999 | |||
| Jaskolowski et al (2020) Mol Cell | State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate | Electron Microscopy Data Bank (EMDB) | EMD-11000 | |||
| Jaskolowski et al (2020) Mol Cell | State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate | Protein Data Bank | 6YXX | |||
| Jaskolowski et al (2020) Mol Cell | State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate | Protein Data Bank | 6YXY | |||
| Saurer et al (2019) Science | Head domain of the mt-SSU assemblosome from Trypanosoma brucei | Protein Data Bank | 6SG9 | |||
| Saurer et al (2019) Science | Body domain of the mt-SSU assemblosome from Trypanosoma brucei | Protein Data Bank | 6SGA | |||
| Saurer et al (2019) Science | mt-SSU assemblosome of Trypanosoma brucei | Protein Data Bank | 6SGB | |||
| Saurer et al (2019) Science | Head domain of the mt-SSU assemblosome from Trypanosoma brucei | Electron Microscopy Data Bank (EMDB) | EMD-10175 | |||
| Saurer et al (2019) Science | Body domain of the mt-SSU assemblosome from Trypanosoma brucei | Electron Microscopy Data Bank (EMDB) | EMD-10177 | |||
| Saurer et al (2019) Science | mt-SSU assemblosome of Trypanosoma brucei | Electron Microscopy Data Bank (EMDB) | EMD-10180 | |||
| Saurer et al (2019) Science | mt-SSU assemblosome of wild-type Trypanosoma brucei brucei | Electron Microscopy Data Bank (EMDB) | EMD-10176 | |||
| Saurer et al (2019) Science | mt-SSU middle assembly intermediate of wild-type Trypanosoma brucei brucei | Electron Microscopy Data Bank (EMDB) | EMD-10178 | |||
| Saurer et al (2019) Science | mt-SSU late assembly intermediate of wild-type Trypanosoma brucei brucei | Electron Microscopy Data Bank (EMDB) | EMD-10179 | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome | Electron Microscopy Data Bank (EMDB) | EMD-0229 | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome | Protein Data Bank | 6HIV | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3 | Electron Microscopy Data Bank (EMDB) | EMD-0230 | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3 | Protein Data Bank | 6HIW | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the large mitoribosomal subunit | Electron Microscopy Data Bank (EMDB) | EMD-0231 | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the large mitoribosomal subunit | Protein Data Bank | 6HIX | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3 | Electron Microscopy Data Bank (EMDB) | EMD-0232 | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3 | Protein Data Bank | 6HIY | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit | Electron Microscopy Data Bank (EMDB) | EMD-0233 | |||
| Ramrath et al (2018) Science | Cryo-EM structure of the Trypanosoma brucei mitochond | Protein Data Bank | 6HIZ | |||
| Kummer et al (2020) EMBO J | 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST) | Electron Microscopy Data Bank (EMDB) | EMD-10779 | |||
| Kummer et al (2020) EMBO J | 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) | Electron Microscopy Data Bank (EMDB) | EMD-10778 | |||
| Kummer et al (2020) EMBO J | 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST) | Protein Data Bank | 6YDW | |||
| Kummer et al (2020) EMBO J | 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) | Protein Data Bank | 6YDP | |||
| Kummer et al (2018) Nature | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit | Protein Data Bank | 6GAZ | |||
| Kummer et al (2018) Nature | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit. | Electron Microscopy Data Bank (EMDB) | EMD-4369 | |||
| Kummer et al (2018) Nature | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit | Protein Data Bank | 6GB2 | |||
| Kummer et al (2018) Nature | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit. | Electron Microscopy Data Bank (EMDB) | EMD-4370 | |||
| Kummer et al (2018) Nature | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome | Protein Data Bank | 6GAW | |||
| Kummer et al (2018) Nature | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome. | Electron Microscopy Data Bank (EMDB) | EMD-4368 | |||
| Wang et al (2019) Nat Struct Mol Bio | Ribosome nascent chain in complex with SecA | Electron Microscopy Data Bank (EMDB) | EMD-10073 | |||
| Wang et al (2019) Nat Struct Mol Bio | SecA in complex with ribosome nascent chain | Electron Microscopy Data Bank (EMDB) | EMD-10074 | |||
| Wang et al (2019) Nat Struct Mol Bio | Ribosome nascent chain in complex with SecA | Protein Data Bank | 6S0K | |||
| Gamerdinger et al (2019) Mol Cell | C.elegans NAC-ribosomal 60S complex | Electron Microscopy Data Bank (EMDB) | EMD-4938 | |||
| Gamerdinger et al (2019) Mol Cell | Early Scanning of Nascent Polypeptides inside the Ribosomal Tunnel by NAC | ProteomXchange data repository | PXD011995 | |||
| Liu et al (2021) Cell Reports | Expression profiling of Ythdc2 ht and Ythdc2 iKO pachytene spermatocytes in mouse. | NCBI Gene Expression Omnibus | GSE166568 | |||
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| Kroupova et al (2021) eLife | Human RNA ligase RTCB in complex with GMP and Co(II) | Protein Data Bank | 7P3B | |||
| Kroupova et al (2021) eLife | Molecular architecture of the human tRNA ligase complex | ProteomXchange data repository | PXD025662 | |||
| Krauer et al (2021) Noncoding RNA | Hold for release | ProteomXchange data repository | PXD029751 | |||
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| Lin, Näger et al (2021) Nucleic Acids Res | The Human Telomeric Proteome During Telomere Replication | ProteomXchange data repository | PXD018712 | |||
| Methot, Padeken et al (2021) Nat Cell Biol | H3K9me blocks transcription factor activity in differentiated cells to ensure tissue integrity | NCBI Gene Expression Omnibus | GSE167168 | |||
| Götze et al (2021) Anal Chem | Single Nucleotide Resolution RNA-Protein Cross-Linking/MS: Simple Extension of the CLIR-MS Workflow | ProteomXchange data repository | PXD024010 | |||
| Ge, Goga, He et al (2022) Gastroenterology | MiR-802 is a Tumor Suppressor of Early Stage Pancreatic Cancer | EBI Biostudies | E-MTAB-10411 | |||
| Gruhl et al (2021) eLife | Identification and evolutionary comparison of circular RNAs in five mammalian species and three organs. | NCBI Gene Expression Omnibus | GSE162152 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 2, overall refinement | Protein Data Bank | 7PE7 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 2, focussed on one protomer | Protein Data Bank | 7PE8 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 2, DEPt-bound subset local refinement | Protein Data Bank | 7PE9 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 1, overall refinement | Protein Data Bank | 7PEA | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 1, focussed on one protomer | Protein Data Bank | 7PEB | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement | Protein Data Bank | 7PEC | |||
| Wälchli et al (2021) eLife | DEPTOR DEP domain tandem (DEPt) | Protein Data Bank | 7PED | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 2, overall refinement | Electron Microscopy Data Bank (EMDB) | EMD-13347 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 2, focussed on one protomer | Electron Microscopy Data Bank (EMDB) | EMD-13348 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 2, DEPt-bound subset local refinement | Electron Microscopy Data Bank (EMDB) | EMD-13349 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 1, overall refinement | Electron Microscopy Data Bank (EMDB) | EMD-13350 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 1, focussed on one protomer | Electron Microscopy Data Bank (EMDB) | EMD-13351 | |||
| Wälchli et al (2021) eLife | cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement | Electron Microscopy Data Bank (EMDB) | EMD-13352 | |||
| Karousis et al (2021) Genome Biol | Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells | Array Express | E-MTAB-10452 | |||
| Eichenberger, Zhan et al (2021) Nucleic Acids Res | deepBlink | Figshare | 88118 | |||
| van den Heuvel et al (2021) eLife | AP-MS analysis of human FUBIeS30/FAU WT and non-cleavable G73,4A and G74V mutants | PRIDE | PXD021864 | |||
| Nörpel, Cavadini et al (2021) PLoS Biology | Structure of the C9orf72-SMCR8 complex | Protein Data Bank | 7O2W | |||
| Nörpel, Cavadini et al (2021) PLoS Biology | Structure of the C9orf72-SMCR8 complex | Electron Microscopy Data Bank (EMDB) | EMD-12700 | |||
| Jomaa et al (2021) Cell Rep | SRP-SR at the distal site conformation | Protein Data Bank | 7OBQ | |||
| Jomaa et al (2021) Cell Rep | RNC-SRP early complex | Protein Data Bank | 7OBR | |||
| Jomaa et al (2021) Cell Rep | SRP-SR at the distal site conformation | Electron Microscopy Data Bank (EMDB) | EMD-12799 | |||
| Jomaa et al (2021) Cell Rep | RNC-SRP-SR complex | Electron Microscopy Data Bank (EMDB) | EMD-12800 | |||
| Jomaa et al (2021) Cell Rep | RNC-SRP early complex | Electron Microscopy Data Bank (EMDB) | EMD-12801 | |||
| Reber et al (2021) Nucleic Acids Res | The phase separation-dependent FUS interactome reveals nuclear and cytoplasmic function of liquid-liquid phase separation | ProteomXchange data repository | PXD015834 | |||
| Reber et al (2021) Nucleic Acids Res | RNA-seq to investigate the phase separation-dependent FUS RNA interactome | Array Express | E-MTAB-8456 | |||
| Bawankar, Lence, Paolantoni et al (2021) Nat Commun | Hakai is required for stabilizing core components of the m6A mRNA methylation machinery | NCBI Gene Expression Omnibus | GSE158663 | |||
| Bawankar, Lence, Paolantoni et al (2021) Nat Commun | Hakai is required for stabilization of core components of the m6A mRNA methylation machinery | PRIDE | PXD022294 | |||
| Reuther, Schneider et al (2021) RNA Biol | mRNA seq of total and polysome associated mRNAs in three different conditions | NCBI Gene Expression Omnibus | GSE135475 | |||
| Reuther, Schneider et al (2021) RNA Biol | Control sample rancRNA_18 | Electron Microscopy Data Bank (EMDB) | EMD-12986 | |||
| Reuther, Schneider et al (2021) RNA Biol | rancRNA_18 processing and classification | Electron Microscopy Data Bank (EMDB) | EMD-12988 | |||
| Title et al (2021) Mol Metab | RNA sequencing of WT and Zeb1200M islets | Array Express | E-MTAB-10535 | |||
| Title et al (2021) Mol Metab | RNA sequencing of RipmiR-141~200c and RipmiR-141~200c Zeb1200M islets | Array Express | E-MTAB-10537 | |||
| Goga, Yagabasan, Herrmanns et al (2021) Nat Commun | RNAseq_45 mir-802fl/fl | NCBI Gene Expression Omnibus | GSM4456008 | |||
| Goga, Yagabasan, Herrmanns et al (2021) Nat Commun | miR-802 regulates Paneth cell function and enterocyte differentiation | Array Express | PRJEB43950 | |||
| Stephan, Ries et al (2021) Nucleic Acids Res | ||||||
| Stephan, Ries et al (2021) Nucleic Acids Res | Ribosomal methyltransferase KsgA bound to small ribosomal subunit | Protein Data Bank | 7O5H | |||
| Stephan, Ries et al (2021) Nucleic Acids Res | Ribosomal methyltransferase KsgA bound to small ribosomal subunit | Electron Microscopy Data Bank (EMDB) | EMD-12736 | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Protein Data Bank | 7O7Y | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Protein Data Bank | 7O7Z | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Protein Data Bank | 7O80 | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | Protein Data Bank | 7O81 | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron Microscopy Data Bank (EMDB) | EMD-12756 | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron Microscopy Data Bank (EMDB) | EMD-12757 | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron Microscopy Data Bank (EMDB) | EMD-12758 | |||
| Bhatt, Scaiola et al (2021) Science | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | Electron Microscopy Data Bank (EMDB) | EMD-12759 | |||
| Bhatt, Scaiola et al (2021) Science | Disome of rabbit ribosomes with the leading one stalled by the SARS-CoV-2 pseudoknot | Electron Microscopy Data Bank (EMDB) | EMD-12760 | |||
| Bhatt, Scaiola et al (2021) Science | Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome | NCBI Gene Expression Omnibus | GSE167421 | |||
| Contu et al (2021) PLoS Pathog | Characterisation of the Semliki Forest Virus-host cell interactome reveals the viral capsid protein as an inhibitor of nonsense-mediated mRNA decay | PRIDE | PXD022036 | |||
| Sahadevan, Hembach et al (2021) Nat Commun | E-MTAB-9211 - Mutant FUS triggers age-dependent synaptic impairment in presymptomatic ALS-FUS mice (CLIP-seq) | Array Express | E-MTAB-9211 | |||
| Sahadevan, Hembach et al (2021) Nat Commun | E-MTAB-9212 - Mutant FUS triggers age-dependent synaptic impairment in presymptomatic ALS-FUS mice (RNA-seq) | Array Express | E-MTAB-9212 | |||
| Sahadevan, Hembach et al (2021) Nat Commun | E-MTAB-10104 - Mutant FUS triggers age-dependent synaptic impairment in presymptomatic ALS-FUS mice (RNA-seq part2) | Array Express | E-MTAB-10104 | |||
| Sahadevan, Hembach et al (2021) Nat Commun | Synaptic accumulation of FUS triggers early misregulation of synaptic RNAs in ALS-FUS mice | PRIDE | PXD024075 | |||
| Lee, Jomaa et al (2021) Sci Adv | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | Protein Data Bank | 7NFX | |||
| Lee, Jomaa et al (2021) Sci Adv | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | Electron Microscopy Data Bank (EMDB) | EMD-12303 | |||
| Lee, Jomaa et al (2021) Sci Adv | SRP54 and SRP RNA proximal site | Electron Microscopy Data Bank (EMDB) | EMD-12304 | |||
| Lee, Jomaa et al (2021) Sci Adv | Mammalian ribosome nascent chain complex with SRP and SRP receptor in the early state B | Electron Microscopy Data Bank (EMDB) | EMD-12305 | |||
| Bhaskar et al (2021) Cell Rep | Structure of human ribosome in classical-PRE state | Protein Data Bank | 6Y0G | |||
| Bhaskar et al (2021) Cell Rep | Structure of human ribosome in hybrid-PRE state | Protein Data Bank | 6Y57 | |||
| Bhaskar et al (2021) Cell Rep | Structure of human ribosome in POST state | Protein Data Bank | 6Y2L | |||
| Bhaskar et al (2021) Cell Rep | Structure of human ribosome in classical-PRE state | Electron Microscopy Data Bank (EMDB) | EMD-10668 | |||
| Bhaskar et al (2021) Cell Rep | Cryo-EM map of human ribosome in hybrid-PRE state | Electron Microscopy Data Bank (EMDB) | EMD-10690 | |||
| Bhaskar et al (2021) Cell Rep | Cryo-EM map of human ribosome in POST state | Electron Microscopy Data Bank (EMDB) | EMD-10674 | |||
| Mendel et al (2021) Cell | RNA m6A methylation of 3? splice site prevents binding of U2AF35 to inhibit splicing | NCBI Gene Expression Omnibus | GSE146873 | |||
| Mendel et al (2021) Cell | Splice site m6A methylation prevents binding of U2AF35 to inhibit RNA splicing | Mendeley Data | s92zgtbhjp | |||
| Plassart, Shayan et al (2021) eLife | Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage) | Protein Data Bank | 6ZUO | |||
| Plassart, Shayan et al (2021) eLife | Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) | Protein Data Bank | 6ZV6 | |||
| Plassart, Shayan et al (2021) eLife | Human RIO1(kd)-StHA late pre-40S particle structural state A (pre 18S rRNA cleavage) | Electron Microscopy Data Bank (EMDB) | EMD-11440 | |||
| Plassart, Shayan et al (2021) eLife | Human RIO1(kd)-StHA late pre-40S particle structural state B (post 18S rRNA cleavage) | Electron Microscopy Data Bank (EMDB) | EMD-11441 | |||
| Plassart, Shayan et al (2021) eLife | Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A head | Electron Microscopy Data Bank (EMDB) | EMD-11446 | |||
| Plassart, Shayan et al (2021) eLife | Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A body | Electron Microscopy Data Bank (EMDB) | EMD-11445 | |||
| Plassart, Shayan et al (2021) eLife | Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A platform | Electron Microscopy Data Bank (EMDB) | EMD-11447 | |||
| Plassart, Shayan et al (2021) eLife | Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural State B Head | Electron Microscopy Data Bank (EMDB) | EMD-11443 | |||
| Plassart, Shayan et al (2021) eLife | Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural State B Body | Electron Microscopy Data Bank (EMDB) | EMD-11442 | |||
| Plassart, Shayan et al (2021) eLife | Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state B platform | Electron Microscopy Data Bank (EMDB) | EMD-11444 | |||
| Plassart, Shayan et al (2021) eLife | Proteomics analysis of human pre-40S ribosomal particles | PRIDE | PXD019270 | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet | Protein Data Bank | 7NQH | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet | Protein Data Bank | 7NQL | |||
| Kummer et al (2021) Mol Cell | 39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2 | Protein Data Bank | 7NSH | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E) | Protein Data Bank | 7NSI | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*) | Protein Data Bank | 7NSJ | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet | Electron Microscopy Data Bank (EMDB) | EMD-12527 | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet | Electron Microscopy Data Bank (EMDB) | EMD-12529 | |||
| Kummer et al (2021) Mol Cell | 39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2 | Electron Microscopy Data Bank (EMDB) | EMD-12567 | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E) | Electron Microscopy Data Bank (EMDB) | EMD-12568 | |||
| Kummer et al (2021) Mol Cell | 55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*) | Electron Microscopy Data Bank (EMDB) | EMD-12569 | |||
| Gudipati et al (2021) Mol Cell | Protease-mediated processing of Argonaute proteins controls small RNA association [RNA-Seq] | NCBI Gene Expression Omnibus | GSE151714 | |||
| Gudipati et al (2021) Mol Cell | Protease-mediated processing of Argonaute proteins controls small RNA association [smallRNA-Seq] | NCBI Gene Expression Omnibus | GSE151715 | |||
| Gudipati et al (2021) Mol Cell | Protease-mediated processing of Argonaute proteins controls small RNA association | NCBI Gene Expression Omnibus | GSE151717 | |||
| Gudipati et al (2021) Mol Cell | Protease-mediated processing of Argonaute proteins controls small RNA association [small RNA RIP-seq] | NCBI Gene Expression Omnibus | GSE156540 | |||
| Ghosh, Börsch et al (2021) BMC Genomics | The transcriptional landscapes of a hepatoma cell line grown on scaffolds of Extracellular Matrix proteins | NCBI Gene Expression Omnibus | GSE142206 | |||
| V’kovski, Gultom, Kelly, Steiner et al (2021) PLoS Biol | Bulk RNA Barcoding and sequencing (BRB-seq) of Mock, SARS-CoV, and SARS-CoV-2 infected human airway epithelial cell cultures at 33°C and 37°C | Array Express | E-MTAB-9781 | |||
| Campagne et al (2021) Nucleic Acids Res | Solution structure of U1-A RRM2 (190-282) | Protein Data Bank | 7AEP | |||
| Campagne et al (2021) Nucleic Acids Res | Solution structure of U1-A RRM2 (190-282) | Biological Magnetic Resonance Data Bank | 34560 | |||
| Bhaskar, Desogus et al (2021) RNA | Cryo-EM structure of the human Ebp1 - 80S ribosome | Protein Data Bank | 7BHP | |||
| Bhaskar, Desogus et al (2021) RNA | Cryo-EM structure of the human Ebp1 - 80S ribosome | Electron Microscopy Data Bank (EMDB) | EMD-12189 | |||
| Dörner et al (2022) Nucleic Acids Res | Genome-wide RNAi screen for human 60S subunit biogenesis factors | ETHZ Research Collection | 528381 | |||
| Rzeszutek et al (2022) Biochim Biophys Acta Mol Cell Res | MAC DNA sequencing of Paramecium meiotic factors (EV, SPO11, MSH4-1, MSH5) | European Nucleotide Archive (ENA) | PRJEB28501 | |||
| Rzeszutek et al (2022) Biochim Biophys Acta Mol Cell Res | MAC DNA sequencing of Paramecium meiotic factors (EV, SPO11, MSH4-1, MSH5) | European Nucleotide Archive (ENA) | PRJEB28649 | |||
| Rzeszutek et al (2022) Biochim Biophys Acta Mol Cell Res | small RNA sequencing during meiotic genes silencing | European Nucleotide Archive (ENA) | PRJEB29502 | |||
| Jomaa, Gamerdinger, Hsieh et al (2022) Science | Ternary complex of ribosome nascent chain with SRP and NAC | Protein Data Bank | 7QWQ | |||
| Jomaa, Gamerdinger, Hsieh et al (2022) Science | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | Protein Data Bank | 7QWR | |||
| Jomaa, Gamerdinger, Hsieh et al (2022) Science | Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC | Protein Data Bank | 7QWS | |||
| Jomaa, Gamerdinger, Hsieh et al (2022) Science | Ternary complex of ribosome nascent chain with SRP and NAC | Electron Microscopy Data Bank (EMDB) | EMD-14191 | |||
| Jomaa, Gamerdinger, Hsieh et al (2022) Science | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | Electron Microscopy Data Bank (EMDB) | EMD-14192 | |||
| Jomaa, Gamerdinger, Hsieh et al (2022) Science | Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC | Electron Microscopy Data Bank (EMDB) | EMD-14193 | |||
| Dewar et al (2022) J Biol Chem | Characterisation of a highly diverged putative mitochondrial ATP synthase peripheral stalk subunit b in Trypanosoma brucei | ProteomXchange data repository | PXD031256 | |||
| Dewar et al (2022) J Biol Chem | Characterisation of a highly diverged putative mitochondrial ATP synthase peripheral stalk subunit b in Trypanosoma brucei | ProteomXchange data repository | PXD031259 | |||
| Li, Krasnkykov et al (2022) Mol Cell | The XRN1-regulated RNA helicase activity of YTHDC2 ensures mouse fertility independently of m6A recognition | NCBI Gene Expression Omnibus | GSE196427 | |||
| Hersch et al (2022) BMC Bioinformatics | Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic experiment | NCBI Gene Expression Omnibus | GSE150286 | |||
| Hersch et al (2022) BMC Bioinformatics | Translation is required for miRNA-dependent decay of endogenous transcripts. | NCBI Gene Expression Omnibus | GSE143277 | |||
| Hersch et al (2022) BMC Bioinformatics | mESCs, BR1_WT_10min_tot | NCBI Gene Expression Omnibus | GSM4255969 | |||
| Hersch et al (2022) BMC Bioinformatics | mESCs, BR1_WT_10min_lab | NCBI Gene Expression Omnibus | GSM4255961 | |||
| Hersch et al (2022) BMC Bioinformatics | mESCs, BR2_WT_10min_tot | NCBI Gene Expression Omnibus | GSM4255973 | |||
| Hersch et al (2022) BMC Bioinformatics | mESCs, BR2_WT_10min_lab | NCBI Gene Expression Omnibus | GSM4255965 | |||
| Müller et al (2022) Stem Cell Reports | ARGONAUTE proteins regulate a specific network of genes through KLF4 in mESCs. | NCBI Gene Expression Omnibus | GSE185410 | |||
| Knörlein et al (2022) Nat Commun | Structural requirements for photo-induced RNA-protein cross-linking | ProteomXchange data repository | PXD031381 | |||
| Dewar et al (2022) Nat Commun | Release of a nuclear ubiquitin-like protein activates proteasomal degradation of mislocalized hydrophobic mitochondrial proteins in trypanosomes | ProteomXchange data repository | PXD027739 | |||
| Dewar et al (2022) Nat Commun | Release of a nuclear ubiquitin-like protein activates proteasomal degradation of mislocalized hydrophobic mitochondrial proteins in trypanosomes | ProteomXchange data repository | PXD027652 | |||
| Dewar et al (2022) Nat Commun | Release of a nuclear ubiquitin-like protein activates proteasomal degradation of mislocalized hydrophobic mitochondrial proteins in trypanosomes | ProteomXchange data repository | PXD031888 | |||
| Bechara et al (2022) RNA | Long non-coding RNAs in Paramecium tetraurelia | NCBI BioProject | PRJNA789403 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc1 lncRNA gene, complete sequence | NCBI GenBank | OL962699 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc3 lncRNA gene, complete sequence | NCBI GenBank | OL962700 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc7 lncRNA gene, complete sequence | NCBI GenBank | OL962701 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc13 lncRNA gene, complete sequence | NCBI GenBank | OL962702 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc14 lncRNA gene, complete sequence | NCBI GenBank | OL962703 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc15 lncRNA gene, complete sequence | NCBI GenBank | OL962704 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc24 lncRNA gene, complete sequence | NCBI GenBank | OL962705 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc32 lncRNA gene, complete sequence | NCBI GenBank | OL962706 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc34 lncRNA gene, complete sequence | NCBI GenBank | OL962707 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc35 lncRNA gene, complete sequence | NCBI GenBank | OL962708 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc36 lncRNA gene, complete sequence | NCBI GenBank | OL962709 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc37 lncRNA gene, complete sequence | NCBI GenBank | OL962710 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc38 lncRNA gene, complete sequence | NCBI GenBank | OL962711 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc39 lncRNA gene, complete sequence | NCBI GenBank | OL962712 | |||
| Bechara et al (2022) RNA | Paramecium tetraurelia lnc40 lncRNA gene, complete sequence | NCBI GenBank | OL962713 | |||
| Domanski et al (2022) Nucleic Acids Res | 40S hnRNP particles are a novel class of nuclear biomolecular condensates | ProteomXchange data repository | PXD031677 | |||
| Schimanski et al (2022) PLoS Pathog | p166 links membrane and intramitochondrial modules of the trypanosomal tripartite attachment complex | ProteomXchange data repository | PXD033042 | |||
| Schaefer, Nabih et al (2022) EMBO Rep. | Transcriptome of AGO1&2 double KO mouse embryonic stem cells | NCBI GenBank | GSE110942 | |||
| Schaefer, Nabih et al (2022) EMBO Rep. | Transcriptomes of miR-290-295 KO mESCs treated with siPOOLs against the transcription factor Tfap4 | NCBI GenBank | GSE181393 | |||
| Schaefer, Nabih al (2022) EMBO Rep. | Ribosome profiling of WT E14, Dgcr8_KO, Dorsha_KO, Dicer_KO and Ago1&2_Double_KO mouse embryonic stem cells | NCBI GenBank | GSE135577 | |||
| Schaefer, Nabih (2022) EMBO Rep. | Identification of functional miRNA gene interactions in mESC by computational data integration approaches. | ProteomXchange data repository | PXD014484 | |||
| Wang, Solberg et al (2022) Cell Reports | Paramecium tetraurelia strain:51 | NCBI GenBank | PRJNA768531 | |||
| Wang, Solberg et al (2022) Cell Reports | NA | NCBI GenBank | PXD028503 | |||
| Muckenfuss et al (2022) Elife | Crystal structure of human CPSF30 in complex with hFip1 | Protein Data Bank | 7ZYH | |||
| Muckenfuss et al (2022) Elife | Crystal structure of human CstF77 in complex with hFip1 | Protein Data Bank | 7ZY4 | |||
| Beer et al (2022) J Exp Med | Individual and combinatorial contribution of type I, II and III interferons in limiting SARS-CoV-2 replication, disease progression and age-related mortality | NCBI GenBank | GSE190674 | |||
| Beer et al (2022) J Exp Med | Data of the SARS-CoV-2 adaptation in type I and III IFN deficient mice | European Nucleotide Archive (ENA) | PRJEB55181 | |||
| LaPierre et al (2022) Nat Commun | MicroRNA-7 regulates melanocortin circuits involved in mammalian energy homeostasis | European Nucleotide Archive (ENA) | PRJEB48660 | |||
| Duszczyk et al (2022) Nat Commun | The solution structure of hsDND1 RRM12 bound to CUUAUUUG RNA | Protein Data Bank | 7Q4L | |||
| Duszczyk et al (2022) Nat Commun | The solution structure of hsDND1 RRM12 bound to CUUAUUUG RNA | Biological Magnetic Resonance Data Bank | 34675 | |||
| Duszczyk et al (2022) Nat Commun | HEK293T LC-MSMS of DND1 immunoprecipitations | ProteomXchange data repository | PXD024666 | |||
| Singh et al (2022) EMBO J | Whole genome sequencing on macronuclear DNA from different Knockdowns and control eperiment | European Nucleotide Archive (ENA) | PRJEB21344 | |||
| Pacesa et al (2022) Cell | SpCas9 bound to AAVS1 off-target1 DNA substrate | Protein Data Bank | 7QQO | |||
| Pacesa et al (2022) Cell | SpCas9 bound to AAVS1 off-target2 DNA substrate | Protein Data Bank | 7QR7 | |||
| Pacesa et al (2022) Cell | SpCas9 bound to AAVS1 off-target3 DNA substrate | Protein Data Bank | 7QQP | |||
| Pacesa et al (2022) Cell | SpCas9 bound to AAVS1 off-target4 DNA substrate | Protein Data Bank | 7QQQ | |||
| Pacesa et al (2022) Cell | SpCas9 bound to AAVS1 off-target5 DNA substrate | Protein Data Bank | 7QQR | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF on-target DNA substrate | Protein Data Bank | 7QQS | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target1 DNA substrate | Protein Data Bank | 7QQT | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target2 DNA substrate | Protein Data Bank | 7QQU | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target3 DNA substrate | Protein Data Bank | 7QQV | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target4 DNA substrate | Protein Data Bank | 7QQW | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target5 DNA substrate | Protein Data Bank | 7QQX | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target6 DNA substrate | Protein Data Bank | 7QR5 | |||
| Pacesa et al (2022) Cell | SpCas9 bound to FANCF off-target7 DNA substrate | Protein Data Bank | 7QQZ | |||
| Pacesa et al (2022) Cell | SpCas9 bound to PTPRC off-target1 DNA substrate | Protein Data Bank | 7QR8 | |||
| Pacesa et al (2022) Cell | SpCas9 bound to TRAC off-target1 DNA substrate | Protein Data Bank | 7QR0 | |||
| Pacesa et al (2022) Cell | SpCas9 bound to TRAC off-target2 DNA substrate | Protein Data Bank | 7QR0 | |||
| Pacesa et al (2022) Cell | SpCas9 bound to CD34 off-target9 DNA substrate | Protein Data Bank | 7ZO1 | |||
| Pacesa et al (2022) Cell | Sequencing data from the SITE-Seq assay to define the off-target landscapes for a set of Cas9 guide RNAs | Europea Nucelotide Archive | PRJNA862989 | |||
| Hannan et al (2022) Cell Rep | RNAseq analysis of A549 cells depleted of RPS19 using siRNAs | NCBI Gene Expression Omnibus | GSE212775 | |||
| Snieckute et al (2022) Cell Metab | Stalled ribosomes are signals for metabolic regulation by the ribotoxic stress response | NCBI Gene Expression Omnibus | GSE205191 | |||
| Schmitz et al (2022) Cell | Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex | EMDB | EMD-15975 | |||
| Schmitz et al (2022) Cell | Cas12k-sgRNA-dsDNA-TnsC non-productive complex | EMDB | EMD-15976 | |||
| Schmitz et al (2022) Cell | TniQ-capped Tns-ATP-dsDNA complex | EMDB | EMD-15974 | |||
| Schmitz et al (2022) Cell | Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex | PDB | 8BD5 | |||
| Schmitz et al (2022) Cell | Cas12k-sgRNA-dsDNA-TnsC non-productive complex | PDB | 8BD6 | |||
| Schmitz et al (2022) Cell | TniQ-capped Tns-ATP-dsDNA complex | PDB | 8BD4 | |||
| Quéviollon Huberdeau et al (2022) Cell Rep | Phosphorylation of the Argonaute ALG-1 regulates microRNA binding during C. elegans development | NCBI Gene Expression Omnibus | GSE174368 | |||
| Quéviollon Huberdeau et al (2022) Cell Rep | A specific Argonaute phosphorylation regulates the binding to microRNAs during C. elegans development | NCBI Gene Expression Omnibus | GSE198352 | |||
| Weber et al (2022) Oncogene | Monitoring the 5'UTR landscape reveals isoform switches to drive translational efficiencies in cancer CAGE-seq | NCBI Gene Expression Omnibus | GSE201308 | |||
| Weber et al (2022) Oncogene | Monitoring the 5'UTR landscape reveals isoform switches to drive translational efficiencies in cancer | NCBI Gene Expression Omnibus | GSE179525 | |||
| Vancura et al (2022) Noncoding RNA | Cancer lncRNA Census 3 | Zenodo | 7075104#.Y_eQcR_MK39 | |||
| Esposito et al (2022) Cell Genom | Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities | NCBI Gene Expression Omnibus | GSE207229 | |||
| Katsioudi et al (2023) Sci Adv | A novel Smg6 mouse model reveals circadian clock regulation through the nonsense-mediated mRNA decay pathway | NCBI Gene Expression Omnibus | GSE208769 | |||
| Shetty et al (2023) EMBO J | TORC1 phosphorylates and inhibits the ribosome preservation factor Stm1 to activate dormant ribosomes | ProteomXchange data repository | PXD037117 | |||
| Olutu et al (2023) Andrology | Intermitochondrial cement (IMC) harbors piRNA biogenesis machinery and exonuclease domain-containing proteins EXD1 and EXD2 in mouse spermatocytes | NCBI Gene Expression Omnibus | GSE194043 | |||
| Dowling et al (2023) RNA | In vivo PIWI slicing in mouse testes deviates from rules established in vitro | NCBI Gene Expression Omnibus | GSE219200 | |||
| Snieckute et al (2023) Science | ROS-induced translation impairment underlies ZAKalpha-mediated metabolic decline in obesity and aging | NCBI Gene Expression Omnibus | GSE235700 | |||
| Zhang et al (2023) Life Sci Alliance | Structural maintenance of chromosome (SMC) sequencing in P.tetraurelia | NCBI Bioproject | PRJNA961343 | |||
| Zhang et al (2023) Life Sci Alliance | Structural maintenance of chromosomes (SMCs) proteins are required for developmental DNA elimination in Paramecium tetraurelia | ProteomXchange | PXD041826 | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of apo Can2 from Thermoanaerobacter brockii | PDB | 8Q3Y | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of cA4-bound Can2 from Thermoanaerobacter brockii | PDB | 8Q3Z | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate | PDB | 8Q40 | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNA | PDB | 8Q41 | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA | PDB | 8Q42 | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNA | PDB | 8Q43 | |||
| Jungfer et al (2023) Nucleic Acids Res | Crystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNA | PDB | 8Q44 | |||
| Moursy et al (2023) Nat Commun | NMR structure of Npl3 RRM1 bound to the AUCCAA RNA | PDB | 7QDD | |||
| Moursy et al (2023) Nat Commun | NMR structure of Npl3 RRM12 bound to the AUCCAGUGGAA RNA | PDB | 7QDE | |||
| Moursy et al (2023) Nat Commun | NMR structure of Npl3 RRM1 bound to the AUCCAA RNA | BMRB | 34691 | |||
| Moursy et al (2023) Nat Commun | NMR structure of Npl3 RRM12 bound to the AUCCAGUGGAA RNA | BMRB | 34692 | |||
| Moursy et al (2023) Nat Commun | The structure and target identification of the tandem RRM of yeast Npl3 bound to RNA reveal a cooperative sequence-specific recognition and an RNA chaperone role in splicing | Array Express | E-MTAB-11736 | |||
| Dorn et al (2023) Nat Commun | Integrative structure determination of an 85-kilodalton PTBP1-IRES complex in solution reveals a strong compaction with pronounced conformational flexibility | ProteomXchange | PXD034894 | |||
| Dorn et al (2023) Nat Commun | Integrative structure determination of PTBP1-viral IRES complex in solution | Zenodo | 6809477 | |||
| Schubert et al (2023) Mol Cell | Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit | PDB | 8PPK | |||
| Schubert et al (2023) Mol Cell | MERS-CoV Nsp1 bound to the human 43S pre-initiation complex | PDB | 8PPL | |||
| Schubert et al (2023) Mol Cell | Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit | EMDB | EMD-17804 | |||
| Schubert et al (2023) Mol Cell | MERS-CoV Nsp1 bound to the human 43S pre-initiation complex | EMDB | EMD-17805 | |||
| Mossmann et al (2023) Cell | RNA SEQ data based on arginase and agmatinase over expression in SNU449 cells respectively RBM39 depletion in SNU449 cells | NCBI Bioproject | PRJNA940402 | |||
| Mossmann et al (2023) Cell | Arginine reprograms metabolism in liver cancer via RBM39 | MassIVE | MSV000091516 | |||
| Mossmann et al (2023) Cell | Arginine reprograms metabolism in liver cancer via RBM39 | MassIVE | MSV000092046 | |||
| Nasif et al (2023) NAR Cancer | Inhibition of nonsense-mediated mRNA decay reduces the tumorigenicity of human fibrosarcoma cells | NCBI Gene Expression Omnibus | GSE232333 | |||
| Nasif et al (2023) NAR Cancer | Inhibition of nonsense-mediated mRNA decay reduces the tumorigenicity of human fibrosarcoma cells | NCBI Gene Expression Omnibus | GSE232185 | |||
| Nasif et al (2023) NAR Cancer | Inhibition of nonsense-mediated mRNA decay reduces the tumorigenicity of human fibrosarcoma cells | ProteomXchange | PXD041853 | |||
| Campagne et al (2023) Nat Commun | Identification of RBM39-dependent alternative splicing events in HeLa cells | NCBI Gene Expression Omnibus | GSE202134 | |||
| Campagne et al (2023) Nat Commun | Solution structure of RBM39 RRM2 bound to 5'-AGCUUUG-3 | PDB | 7Q33 | |||
| Campagne et al (2023) Nat Commun | Solution structure of RBM39 RRM1 bound to U1 snRNA stem loop 3 | PDB | 7ZAP | |||
| Campagne et al (2023) Nat Commun | Solution structure of RBM39 RRM2 bound to 5'-AGCUUUG-3 | BMRB | 34673 | |||
| Campagne et al (2023) Nat Commun | Solution structure of RBM39 RRM1 bound to U1 snRNA stem loop 3 | BMRB | 34715 | |||
| Gerber et al (2023) Life Sci Alliance | A Msp1-containing complex removes orphaned proteins in the mitochondrial outer membrane of T. brucei | ProteomXchange | PXD039631 | |||
| Gerber et al (2023) Life Sci Alliance | An Msp1-containing complex removes orphaned proteins in the mitochondrial outer membrane of trypanosomes (RNAi knockdown data) | ProteomXchange | PXD039634 | |||
| Dohnalkova et al (2023) Cell Rep | Essential roles of RNA cap-proximal ribose methylation in mammalian embryonic development and fertility | NCBI Gene Expression Omnibus | GSE235348 | |||
| Pérez-Berlanga et al (2023) EMBO J | LC-MS/MS of HEK-293 inducibly expressing TDP-43 protein (WT and 3 non-functional mutants) | ProteomXchange | PXD041795 | |||
| Beusch et al (2023) Mol Cell | Targeted high throughput mutagenesis of the human spliceosome reveals its in vivo operating principles | NCBI Gene Expression Omnibus | GSE218307 | |||
| Beusch et al (2023) Mol Cell | Targeted high throughput mutagenesis of the human spliceosome reveals its in vivo operating principles | ProteomXchange | PXD038067 | |||
| Beusch et al (2023) Mol Cell | Proximity labelling and LCMSMS analysis of spliceosome complexes using SUGP1-miniTurbo | NCBI Gene Expression Omnibus | GSE218307 | |||
| Welte et al (2023) Mol Cell | Convergence of distinct RNA-silencing pathways on GW182/Tnrc6 | NCBI Gene Expression Omnibus | GSE205968 | |||
| Welte et al (2023) Mol Cell | Convergence of distinct RNA-silencing pathways on GW182/Tnrc6 | ProteomXchange | PXD034537 | |||
| Welte et al (2023) Mol Cell | Convergence of distinct RNA-silencing pathways on GW182/Tnrc6 | ProteomXchange | PXD041242 | |||
| Gamerdinger et al (2023) Science | Ternary complex of translating ribosome, NAC and METAP1 | PDB | 8P2K | |||
| Gamerdinger et al (2023) Science | Ternary complex of translating ribosome, NAC and METAP1 | EMDB | EMD-17367 | |||
| Vatandaslar et al (2023) Nat Commun | In vivo PAR-CLIP (viP-CLIP) of liver TIAL1 unveils targets regulating cholesterol synthesis and secretion | NCBI Bioproject | PRJNA869588 | |||
| Esposito et al (2023) Nat Commun | Tumour mutations in long noncoding RNAs enhance cell fitness | NCBI Bioproject | PRJNA966897 | |||
| Jaskolowski et al (2023) Nat Struct Mol Biol | Structure of the TRAP complex with the Sec translocon and a translating ribosome | PDB | 8BTK | |||
| Jaskolowski et al (2023) Nat Struct Mol Biol | Structure of the TRAP complex with the Sec translocon and a translating ribosome | EMDB | EMD-16232 | |||
| Saurer et al (2023) Science | 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA | PDB | 8OIN | |||
| Saurer et al (2023) Science | 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA | PDB | 8OIP | |||
| Saurer et al (2023) Science | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | PDB | 8OIQ | |||
| Saurer et al (2023) Science | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | PDB | 8OIR | |||
| Saurer et al (2023) Science | 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA | PDB | 8OIS | |||
| Saurer et al (2023) Science | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | PDB | 8OIT | |||
| Saurer et al (2023) Science | 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA | EMDB | EMD-16894 | |||
| Saurer et al (2023) Science | 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA | EMDB | EMD-16895 | |||
| Saurer et al (2023) Science | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | EMDB | EMD-16896 | |||
| Saurer et al (2023) Science | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | EMDB | EMD-16897 | |||
| Saurer et al (2023) Science | 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA | EMDB | EMD-16898 | |||
| Saurer et al (2023) Science | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | EMDB | EMD-16898 | |||
| Saurer et al (2023) Science | Molecular basis of non-canonical stop codon recognition by mtRF1 in human mitochondria | NCBI Gene Expression Omnibus | GSE216779 | |||
| Saurer et al (2023) Science | mtRF1 recognises non-canonical stop codons in human mitochondria | NCBI Gene Expression Omnibus | GSE216979 | |||
| Flemr et al (2023) RNA | Novel RNA-binding Proteins Bind U1 snRNA to Promote Splicing of Weak 5' Splice Sites | NCBI Gene Expression Omnibus | GSE179744 | |||
| Flemr et al (2023) RNA | Novel RNA-binding Proteins Bind U1 snRNA to Promote Splicing of Weak 5' Splice Sites | ProteomXchange | PXD029392 | |||
| Padroni et al (2023) Nucleic Acids Res | A hybrid structural determination approach to investigate protein-RNA complexes of the nucleocapsid protein of SARS-CoV-2 | ProteomXchange | PXD037438 | |||
| Padroni et al (2023) Nucleic Acids Res | A hybrid structure determination approach to investigate the druggability of the nucleocapsid protein of SARS-CoV-2 | Dryad | g4f4qrftb | |||
| Solberg et al (2023) Cell Rep | Developmental mRNA clearance by PIWI-bound endo-siRNAs in Paramecium | NCBI Bioproject | PRJNA881722 | |||
| Solberg et al (2023) Cell Rep | Developmental mRNA clearance by PIWI-bound endo-siRNAs in Paramecium | ProteomXchange | PXD038984 | |||