Publications 2017

Publications 2016 Publications 2015 Publications 2014

S. E. Allen, I. Hug, S. Pabian, I. Rzeszutek, C. Hoehener and M. Nowacki (2017)
Circular Concatemers of Ultra-Short DNA Segments Produce Regulatory RNAs
Cell, 168(6), 990-999 e7
Pubmed(external link)
Link to Press Release(external link)

E. Sasaki, D. Böhringer, M. van de Waterbeemd, M. Leibundgut, R. Zschoche, A. J. Heck, N. Ban and D. Hilvert (2017)
Structure and assembly of scalable porous protein cages
Nat Commun, 8, 14663
Pubmed(external link)

D. Cirera-Salinas, M. Bodak and C. Ciaudo (2017)
Versatility of DGCR8 controls stem cell fate
Cell Cycle, 16 (8), 729-730
Pubmed(external link)

A. Lanzos, J. Carlevaro-Fita, L. Mularoni, F. Reverter, E. Palumbo, R. Guigo and R. Johnson (2017)
Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features
Sci Rep, 7, 41544
Pubmed(external link)

B. Malone, I. Atanassov, F. Aeschimann, X. Li, H. Grosshans and C. Dieterich (2017)
Bayesian prediction of RNA translation from ribosome profiling
Nucleic Acids Res, Epub ahead of print
Pubmed(external link)

G. Balistreri, C. Bognanni and O. Mühlemann (2017)
Virus Escape and Manipulation of Cellular Nonsense-Mediated mRNA Decay
Viruses, 9 (1)
Pubmed(external link)

R. Ungricht and U. Kutay (2017)
Mechanisms and functions of nuclear envelope remodelling
Nat Rev Mol Cell Biol, 18 (4), 229-245
Pubmed(external link)

M. Bolten, C. Vahlensieck, C. Lipp, M. Leibundgut, N. Ban and E. Weber-Ban (2017)
Depupylase Dop requires Inorganic Phosphate in the Active Site for Catalysis
J Biol Chem, 292 (10), 4044-4053
Pubmed(external link)

M. Bodak, D. Cirera-Salinas, J. Luitz and C. Ciaudo (2017)
The role of RNA interference in stem cell biology: Beyond the mutant phenotypes
J Mol Biol, Epub ahead of print
Pubmed(external link)

C. Montellese, N. Montel-Lehry, A. K. Henras, U. Kutay, P. E. Gleizes and M. F. O'Donohue (2017)
Poly(A)-specific ribonuclease is a nuclear ribosome biogenesis factor involved in human 18S rRNA maturation
Nucleic Acids Res, Epub ahead of print
Pubmed(external link)

D. Mas-Ponte, J. Carlevaro-Fita, E. Palumbo, T. Hermoso Pulido, R. Guigo and R. Johnson (2017)
LncATLAS database for subcellular localisation of long noncoding RNAs
RNA, Epub ahead of print
Pubmed(external link)

A. Vancevska, K. M. Douglass, V. Pfeiffer, S. Manley and J. Lingner (2017)
The telomeric DNA damage response occurs in the absence of chromatin decompaction
Genes Dev, 31 (6), 567-577
Pubmed(external link)

M. Koch, J. Willi, U. Pradère, J. Hall and N. Polacek (2017)
Critical 23S rRNA interactions for macrolide-dependent ribosome stalling on the ErmCL nascent peptide chain
Nucleic Acids Res, Epub ahead of print
Pubmed(external link)

G. Dorn, A. Leitner, J. Boudet, S. Campagne, C. von Schroetter, A. Moursy, R. Aebersold and F. H. Allain (2017)
Structural modeling of protein-RNA complexes using crosslinking of segmentally isotope-labeled RNA and MS/MS
Nat Methods, Epub ahead of print
Pubmed(external link)

B. Samatanga, A. Cléry, P. Barraud, F. H. Allain and I. Jelesarov (2017)
Comparative analyses of the thermodynamic RNA binding signatures of different types of RNA recognition motifs
Nucleic Acids Res, Epub ahead of print
Pubmed(external link)

J. Yu and C. Ciaudo (2017)
Vector Integration Sites Identification for Gene-Trap Screening in Mammalian Haploid Cells
Sci Rep, 7, 44736
Pubmed(external link)

U. Pradère, F. Halloy and J. Hall (2017)
Chemical synthesis of long RNAs with terminal 5'-phosphate groups
Chemistry, 23 (22), 5210-5213
Pubmed(external link)

A. Cléry, T. J. Sohier, T. Welte, A. Langer and F. H. Allain (2017)
switchSENSE: A new technology to study protein-RNA interactions
Methods, Epub ahead of print
Pubmed(external link)

C. Pulido-Quetglas, E. Aparicio-Prat, C. Arnan, T. Polidori, T. Hermoso, E. Palumbo, J. Ponomarenko, R. Guigo and R. Johnson (2017)
Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion
PLoS Comput Biol, 13 (3), e1005341
Pubmed(external link)

J. Y. Tan, A. A. Smith, M. Ferreira da Silva, C. Matthey-Doret, R. Rueedi, R. Sonmez, D. Ding, Z. Kutalik, S. Bergmann and A. C. Marques (2017)
cis-Acting Complex-Trait-Associated lincRNA Expression Correlates with Modulation of Chromosomal Architecture
Cell Rep, 18 (9), 2280-2288
Pubmed(external link)

K. Ahmed, M. P. LaPierre, E. Gasser, R. Denzler, Y. Yang, T. Rulicke, J. Kero, M. Latreille and M. Stoffel (2017)
Loss of microRNA-7a2 induces hypogonadotropic hypogonadism and infertility
J Clin Invest, 127 (3), 1061-1074
Pubmed(external link)

A. Riba, M. Emmenlauer, A. Chen, F. Sigoillot, F. Cong, C. Dehio, J. Jenkins and M. Zavolan (2017)
Explicit Modeling of siRNA-Dependent On- and Off-Target Repression Improves the Interpretation of Screening Results
Cell Syst, 4 (2), 182-193 e4
Pubmed(external link)

H. Leske, S. Hornemann, U. S. Herrmann, C. Zhu, P. Dametto, B. Li, F. Laferriere, M. Polymenidou, P. Pelczar, R. R. Reimann, P. Schwarz, E. J. Rushing, K. Wüthrich and A. Aguzzi (2017)
Protease resistance of infectious prions is suppressed by removal of a single atom in the cellular prion protein
PLoS One, 12 (2), e0170503
Pubmed(external link)

M. M. Slabodnick, J. G. Ruby, S. B. Reiff, E. C. Swart, S. Gosai, S. Prabakaran, E. Witkowska, G. E. Larue, S. Fisher, R. M. Freeman, Jr., J. Gunawardena, W. Chu, N. A. Stover, B. D. Gregory, M. Nowacki, J. Derisi, S. W. Roy, W. F. Marshall and P. Sood (2017)
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell
Curr Biol, 27 (4), 569-575
Pubmed(external link)

G. Lossaint and J. Lingner (2017)
TZAP or not to zap telomeres
Science, 355 (6325), 578-579
Pubmed(external link)

M. Bodak, D. Cirera-Salinas, J. Yu, R. P. Ngondo and C. Ciaudo (2017)
Dicer, a new regulator of pluripotency exit and LINE-1 elements in mouse embryonic stem cells
FEBS Open Bio, 7 (2), 204-220
Pubmed(external link)

J. Barandun, F. F. Damberger, C. L. Delley, J. Laederach, F. H. Allain and E. Weber-Ban (2017)
Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins
BMC Struct Biol, 17 (1), 1
Pubmed(external link)

C. H. Aylett and N. Ban (2017)
Eukaryotic aspects of translation initiation brought into focus
Philos Trans R Soc Lond B Biol Sci, 372, 1716
Pubmed(external link)

E. Moroz, S. H. Lee, K. Yamada, F. Halloy, S. Martinez-Montero, H. Jahns, J. Hall, M. J. Damha, B. Castagner and J. C. Leroux (2016)
Carrier-free Gene Silencing by Amphiphilic Nucleic Acid Conjugates in Differentiated Intestinal Cells
Mol Ther Nucleic Acids, 5, e364
Pubmed(external link)

F. Aeschimann, P. Kumari, H. Bartake, D. Gaidatzis, L. Xu, R. Ciosk and H. Grosshans (2017)
LIN41 Post-transcriptionally Silences mRNAs by Two Distinct and Position-Dependent Mechanisms
Mol Cell, 65 (3), 476-489 e4
Pubmed(external link)

J. Bruggisser, S. Käser, J. Mani and A. Schneider (2017)
Biogenesis of a mitochondrial outer membrane protein in Trypanosoma brucei: targeting signal and dependence on an unique biogenesis factor
J Biol Chem, 292 (8), 3400-3410
Pubmed(external link)

D. Cirera-Salinas, J. Yu, M. Bodak, R. P. Ngondo, K. M. Herbert and C. Ciaudo (2017)
Noncanonical function of DGCR8 controls mESC exit from pluripotency
J Cell Biol, 216 (2), 355-366
Pubmed(external link)

A. González and M. N. Hall (2017)
Nutrient sensing and TOR signaling in yeast and mammals
EMBO J, 36 (4), 397-408
Pubmed(external link)

J. Mani, S. Rout, S. Desy and A. Schneider (2017)
Mitochondrial protein import - Functional analysis of the highly diverged Tom22 orthologue of Trypanosoma brucei
Sci Rep, 7, 40738
Pubmed(external link)

J. Barman-Aksözen, P. Ćwiek, V. B. Bansode, F. Koentgen, J. Trüb, P. Pelczar, P. Cinelli, X. Schneider-Yin, D. Schümperli and E. I. Minder (2017)
Modelling the ferrochelatase c.315-48C modifier mutation for erythropoietic protoporphyria (EPP) in mice
Dis Model Mech, 10 (3), 225-233
Pubmed(external link)

S. Fitter, M. P. Matthews, S. K. Martin, J. Xie, S. S. Ooi, C. R. Walkley, J. D. Codrington, M. A. Ruegg, M. N. Hall, C. G. Proud, S. Gronthos and A. C. Zannettino (2017)
mTORC1 Plays an Important Role in Skeletal Development by Controlling pre-Osteoblast Differentiation
Mol Cell Biol, 37 (7), e00668-16
Pubmed(external link)

M. Polymenidou and D. W. Cleveland (2017)
Biological Spectrum of Amyotrophic Lateral Sclerosis Prions
Cold Spring Harb Perspect Med, Epub ahead of print
Pubmed(external link)

P. Bieri, M. Leibundgut, M. Saurer, D. Boehringer and N. Ban (2017)
The complete structure of the chloroplast 70S ribosome in complex with translation factor pY
EMBO J, 36 (4), 475-486
Pubmed(external link)

A. Harsman and A. Schneider (2017)
Mitochondrial protein import in trypanosomes - Expect the unexpected
Traffic, 18 (2), 96-109
Pubmed(external link)

M. Li, H. L. Lightfoot, F. Halloy, A. L. Malinowska, C. Berk, A. Behera, D. Schümperli and J. Hall (2017)
Synthesis and cellular activity of stereochemically-pure 2'-O-(2-methoxyethyl)-phosphorothioate oligonucleotides
Chem Commun (Camb), 53 (3), 541-544
Pubmed(external link)

M. Colombo, E. D. Karousis, J. Bourquin, R. Bruggmann and O. Mühlemann (2017)
Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways
RNA, 23 (2), 189-201
Pubmed(external link)

M. Feretzaki and J. Lingner (2017)
A practical qPCR approach to detect TERRA, the elusive telomeric repeat-containing RNA
Methods, 114, 39-45
Pubmed(external link)

L. Champion, M. I. Linder and U. Kutay (2017)
Cellular Reorganization during Mitotic Entry
Trends Cell Biol, 27 (1), 26-41
Pubmed(external link)

J. Majerska, S. Redon and J. Lingner (2017)
Quantitative telomeric chromatin isolation protocol for human cells
Methods, 114, 28-38
Pubmed(external link)

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