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Bioinformatics Support Basel

Expertise:

1. Support and discussion for experimental design

2. Functional genomics analyses

  • Genomic data pre-processing and alignment
  • RNA-seq - focus on differential expression analysis
  • small RNA-seq
  • ChIP-seq normalization, peak finding and profiling
  • RNA IP-seq (CLIP, RIP, etc.)
  • Ribosomal footprinting
  • Motif finding
  • Enrichment analyses (GO terms, genomic features)
  • Integration of publicly available datasets
Much of my work involves integrating different types of datasets, including publicly available data. In the past I have also done evolutionary and phylogenetic analyses, and I am generally happy to work with any type of genomic data!

Contact Information:

Dr. Sarah Carl

FMI Basel
Maulbeerstrasse 66
P.O. Box 3775
CH-4002 Basel

E-Mail: sarah.carl at fmi.ch
Phone: +41 61 69 75172


The National Centers of Competence in Research (NCCR) are a research instrument of the Swiss National Science Foundation

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